Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0085
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 32 0.58
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 31 1.0
01_06_0873 + 32617428-32617532,32618166-32618234,32619195-326193... 29 3.1
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 29 5.4
04_03_0923 + 20843477-20845044,20846081-20846996 29 5.4
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 28 7.2
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 9.5
03_05_1133 - 30614901-30615389,30615823-30615933,30616113-306161... 28 9.5
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 28 9.5
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 22 LDYWDYSFNYYYIDKNQQVRHVTFENINH-TFQNNIVYDIPAHIERKPGHFNPSLTFPAS 198
L W S Y Y ++++Q+ ++ NH ++ + ++Y E+ H++ L F
Sbjct: 1357 LQRWAISTFYTYFEQDKQLVRGVSDSQNHFSWMSGLIYQSQGKYEKAAAHYSHLLQFEEG 1416
Query: 199 NLAVVSDG 222
++ SDG
Sbjct: 1417 LASMESDG 1424
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/90 (22%), Positives = 40/90 (44%)
Frame = +1
Query: 487 RQVQGKGIVHYAAIETSCSALYVASDNIFKFTMDSETEITQKNQRMESRKIIYTWLQTSE 666
++ + G A + S+L + FT+ S+T+ T+K + I++ L E
Sbjct: 402 KEAEDPGFGQMADVGIYMSSLEILEKTSTTFTITSKTDETKKQLYKDFDDIVHNCLTEQE 461
Query: 667 DVTVTLKLEEKYNKKHFHVLVSPITIKVSY 756
T+ ++ EKYN ++ L + +Y
Sbjct: 462 FETLWPQMIEKYNLQNVKYLQLMFKARATY 491
>01_06_0873 +
32617428-32617532,32618166-32618234,32619195-32619380,
32619687-32619776,32620389-32620462,32621149-32621260,
32621413-32621468,32621826-32621880,32621965-32622021,
32622696-32622797,32623467-32623547,32623756-32623808,
32625245-32625314,32626540-32626603,32627339-32627487,
32627564-32627719,32628011-32628108,32628763-32628847,
32628932-32628997,32629066-32629125,32629408-32629494,
32630307-32630360,32630538-32630576,32630651-32630779,
32630859-32630911,32630984-32631032,32632240-32632298,
32633111-32633259,32633338-32633492,32633719-32633847,
32633932-32634017,32634220-32634335,32634429-32634541,
32635335-32635458,32635540-32635658,32636289-32636490,
32636586-32636757,32637852-32638176,32638442-32638529,
32638970-32639059,32639169-32639370,32639681-32639705
Length = 1450
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -2
Query: 566 LSDATYKALQLVSMAA*CTIPFPCTCLKLICFQDS-PSLSKDTQVRTDSKCFSFC*TDCS 390
+ DA A+ L + C+ CTCL+ C + SLS ++ + CS
Sbjct: 25 VKDAAEHAI-LKELMGSCSSQVQCTCLECFCKKPKLRSLSSPMEIAQNEDILRMFLVACS 83
Query: 389 -KQCKVSVFFFSCIR 348
K K+SV SC++
Sbjct: 84 VKSVKLSVIGLSCLQ 98
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 344 MHEYKRRKILKLCIAYYNQFNKMKNILSLFLLGCPLIMM-ESLG 472
+H K IL I ++NQ + NIL L L GC L+ + ES+G
Sbjct: 557 LHSLKFGTILMFEITWFNQ---LSNILFLSLKGCMLVRLPESIG 597
>04_03_0923 + 20843477-20845044,20846081-20846996
Length = 827
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 571 FKFTMDSETEITQKNQRMESRKIIYTWLQTSEDVTVTLKLEEKYNKKHFHVLVSPITI 744
F +T D+ET I + R ++ TWL+ S+D + + E + + + P TI
Sbjct: 250 FIYTWDNETAIMHAGIDVFGRGLVATWLEESQDWLIYYRQPEVH--CDVYAICGPFTI 305
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = +1
Query: 97 NINHTFQNNIVYDIPAHIERKPGHFNPSLTFPASNLAVVSDGTGMLHIVDTGPRNRSAGR 276
N+ HTF + +V P + K +PSL P+ + + + G VDT RN +
Sbjct: 499 NLGHTFSSVVV---PTPMSAK----SPSLGIPSPPVGIFAQGKAPALHVDTAQRNPARSN 551
Query: 277 NQLWHTLQSSLILGENKYFVIV 342
++ + L+ G Y+ V
Sbjct: 552 QEMPGVV--FLLAGNQSYYTAV 571
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 401 FNKMKNILSLFLLGCPLIMM-ESLG 472
FN++ NIL L L GC L+ + ES+G
Sbjct: 620 FNQLSNILYLSLKGCKLVKLPESIG 644
>03_05_1133 - 30614901-30615389,30615823-30615933,30616113-30616178,
30616347-30616406,30616493-30616801,30616960-30617108,
30617200-30617269,30617370-30617494,30617516-30617573,
30618176-30618370,30618585-30618857,30618950-30619120,
30619203-30619333,30619423-30619582,30619712-30619900,
30620023-30620118,30620381-30620611,30620715-30620853,
30620903-30621057,30621160-30621378
Length = 1131
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Frame = +1
Query: 391 LQSVQQNEKHFESVLTWVSF-DNDGESWKQMSFRQVQGKGIVHYAAIETSCSALYVASDN 567
LQ++ K F +L D+D + +S Q +GI+ S ++ +
Sbjct: 837 LQAIHSLRKQFSYILKDAGLVDSDANTNNSLSHNQSLVRGIICSGLFPGITSVVHRENSM 896
Query: 568 IFKFTMDSETEITQKNQRMESRKIIYTWLQTSEDVTV-TLKLEEKY 702
FK D + + + + + I Y WL E V LK+ + Y
Sbjct: 897 SFKTMDDGQVLLYANSVNAKYQTIPYPWLVFGEKVKAGHLKMLDGY 942
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 367 NTETLHCLLQSVQQNEKHFESVLTWVSFD--NDGESWKQM 480
N +TL C L+ + Q + F VL V FD N+ W Q+
Sbjct: 462 NLDTLQCKLRDILQKSEKFLLVLDDVWFDEFNNETEWDQL 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,978,927
Number of Sequences: 37544
Number of extensions: 419783
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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