Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0085
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 471 PRLSIIIKGHPSKNRLKMFFIL 406
           P   I+ +G P   R KMFF L
Sbjct: 603 PERLILPRGKPEGMRYKMFFFL 624



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 628 SRKIIYTWLQTSEDVTVTLKLEEKYNKKHF 717
           SR  I+T L + +   V +  E  YN K F
Sbjct: 92  SRNAIFTPLNSEQKYEVRMLFELLYNAKDF 121


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 471 PRLSIIIKGHPSKNRLKMFFIL 406
           P   I+ +G P   R KMFF L
Sbjct: 603 PERLILPRGKPEGMRYKMFFFL 624



 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 628 SRKIIYTWLQTSEDVTVTLKLEEKYNKKHF 717
           SR  I+T L + +   V +  E  YN K F
Sbjct: 92  SRNAIFTPLNSEQKYEVRMLFELLYNAKDF 121


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 125 LFMISQLTLKGNQVIS 172
           LF++++LTL GN + S
Sbjct: 406 LFVLNRLTLSGNAIAS 421


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 177 RVEMTWFPFN 148
           ++++TWFPF+
Sbjct: 112 KIDITWFPFD 121


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 177 RVEMTWFPFN 148
           ++++TWFPF+
Sbjct: 112 KIDITWFPFD 121


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 177 RVEMTWFPFN 148
           ++++TWFPF+
Sbjct: 180 KIDITWFPFD 189


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 177 RVEMTWFPFN 148
           ++++TWFPF+
Sbjct: 180 KIDITWFPFD 189


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = -1

Query: 174 VEMTWFPFNVSWD 136
           VE +W+ + + WD
Sbjct: 77  VEQSWYDYKLKWD 89


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -1

Query: 177 RVEMTWFPFN 148
           ++++TWFPF+
Sbjct: 149 KIDITWFPFD 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,541
Number of Sequences: 438
Number of extensions: 4721
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)