Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0085
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69730.1 68414.m08024 protein kinase family protein contains ...    33   0.21 
At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH...    29   3.4  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    29   3.4  
At2g38255.1 68415.m04698 expressed protein contains Pfam profile...    28   7.9  

>At1g69730.1 68414.m08024 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 792

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
 Frame = +1

Query: 100 INHTFQNNIVYDIPAHIERKPGHFNPSLTFPASNLAVVSDGTGMLHIVDTGPRNRSAGRN 279
           ++HT    +V     +++  P +F  S     S+  V S G  ++ ++ TG ++ S  R+
Sbjct: 600 VDHTHLTTVVSGTVGYMD--PEYFQSSQFTDKSD--VYSFGVVLVELI-TGEKSISFLRS 654

Query: 280 QLWHTLQSSLILG--ENKYFVIVDARIQE 360
           Q   TL +  IL   ENK F I+DARI++
Sbjct: 655 QENRTLATYFILAMKENKLFDIIDARIRD 683


>At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 847

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 678 HVKIRRKIQ*ETFPCVSFTNYHQGELCWKTL 770
           H  +   I  +TF C++  N+ Q ++CW  L
Sbjct: 597 HRSVCSSISIDTFTCIANANHMQDDICWLAL 627


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
           2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
           and PF00569: Zinc finger, ZZ type; identical to cDNA
           p300/CBP acetyltransferase-related protein 2
           GI:12597460
          Length = 1691

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 64  KNQQVRHVTFENINHTFQNNIVYDIPAHIERKPGHFNPS 180
           K Q  +   F + +   QNN+  D+  H++ +PG  NPS
Sbjct: 425 KQQSQQQQRFISHDAFGQNNVASDMVTHVKHEPGMENPS 463


>At2g38255.1 68415.m04698 expressed protein contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 333

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 584 WILKQRLLRKIKGWNREKLFTH 649
           W+LK  ++ +I G+  +KLFTH
Sbjct: 215 WVLKDTVMNEIVGYWPKKLFTH 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,751,924
Number of Sequences: 28952
Number of extensions: 363132
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)