Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0084
(510 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8 prot... 32 0.003
AY873913-1|AAW67569.2| 377|Tribolium castaneum chitinase 2 prot... 26 0.22
AY873916-1|AAW67572.1| 377|Tribolium castaneum chitinase 6 prot... 24 0.68
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 23 2.1
AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc fin... 23 2.1
DQ659249-1|ABG47447.1| 383|Tribolium castaneum chitinase 9 prot... 22 3.7
AY873915-1|AAW67571.2| 384|Tribolium castaneum chitinase 16 pro... 22 3.7
AY873914-1|AAW67570.1| 384|Tribolium castaneum chitinase 3 prot... 22 3.7
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 21 4.8
AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein p... 21 8.4
AJ005421-1|CAA06527.1| 249|Tribolium castaneum caudal protein p... 21 8.4
>DQ659248-1|ABG47446.1| 496|Tribolium castaneum chitinase 8
protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.003
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +3
Query: 39 SSYDWSRVRFT---MDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDK 209
S+Y W RFT +DP +C + +F+ L G++ + ++ + ++ ++V
Sbjct: 34 STYRWGNGRFTVDHIDPYLCTHIIYSFVGLQADGNVRHLDEYLDVDAGTIAKLNALKVKN 93
Query: 210 LELTGRTLLAIPGYEQKVE 266
L +TL+AI G+ + E
Sbjct: 94 PNL--KTLIAIGGWNEGSE 110
>AY873913-1|AAW67569.2| 377|Tribolium castaneum chitinase 2
protein.
Length = 377
Score = 25.8 bits (54), Expect = 0.22
Identities = 13/61 (21%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 MDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIE-VDKLELTGRTLLAIPG 248
+DP++C +N AF+ ++ G + + W K +++E + ++ +T+++I G
Sbjct: 48 IDPNICTHINYAFLGVYPNGTL---QMIDEWGDIEKGNFAEVEALKEINPNLKTIISIGG 104
Query: 249 Y 251
+
Sbjct: 105 W 105
>AY873916-1|AAW67572.1| 377|Tribolium castaneum chitinase 6
protein.
Length = 377
Score = 24.2 bits (50), Expect = 0.68
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 72 MDPSMCRAVNEAFIRLHDAGDI 137
+D ++C VN AF+ L+D G +
Sbjct: 45 IDANLCTHVNYAFLGLNDDGSL 66
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 22.6 bits (46), Expect = 2.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 385 SLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TST 272
S W++T TSP +T T T+ ++ + T+T
Sbjct: 1040 STWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTT 1077
>AY316682-1|AAQ83696.1| 456|Tribolium castaneum Sp-like zinc finger
protein protein.
Length = 456
Score = 22.6 bits (46), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 313 SSEPSTLYAK*TSTPNSTFCS 251
SS PS+L + TST N T+ S
Sbjct: 78 SSTPSSLPTQRTSTSNPTYSS 98
>DQ659249-1|ABG47447.1| 383|Tribolium castaneum chitinase 9
protein.
Length = 383
Score = 21.8 bits (44), Expect = 3.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 72 MDPSMCRAVNEAFIRLHDAG 131
+DP++C + AF+ L D G
Sbjct: 45 VDPTLCTHLLYAFVGLRDDG 64
>AY873915-1|AAW67571.2| 384|Tribolium castaneum chitinase 16
protein.
Length = 384
Score = 21.8 bits (44), Expect = 3.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 75 DPSMCRAVNEAFIRLHDAGDI 137
DP++C + AF+ L + G +
Sbjct: 47 DPNLCTHILYAFVGLREDGSV 67
>AY873914-1|AAW67570.1| 384|Tribolium castaneum chitinase 3
protein.
Length = 384
Score = 21.8 bits (44), Expect = 3.7
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +3
Query: 75 DPSMCRAVNEAFIRLHDAGDI 137
DP++C + AF+ L + G +
Sbjct: 47 DPNLCTHILYAFVGLREDGSV 67
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.4 bits (43), Expect = 4.8
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +1
Query: 355 GMWLWLS 375
GMW+WLS
Sbjct: 408 GMWMWLS 414
>AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein
protein.
Length = 287
Score = 20.6 bits (41), Expect = 8.4
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = -2
Query: 368 HSHIPKHGFYSSSS 327
HSH+P H +++++
Sbjct: 53 HSHMPPHSVFAANN 66
>AJ005421-1|CAA06527.1| 249|Tribolium castaneum caudal protein
protein.
Length = 249
Score = 20.6 bits (41), Expect = 8.4
Identities = 5/14 (35%), Positives = 11/14 (78%)
Frame = -2
Query: 368 HSHIPKHGFYSSSS 327
HSH+P H +++++
Sbjct: 53 HSHMPPHSVFAANN 66
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,737
Number of Sequences: 336
Number of extensions: 2544
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -