Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0084
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 209 2e-55
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 148 6e-37
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 36 0.004
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 32 0.043
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 30 0.18
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 0.71
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 0.93
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 2.9
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 26 3.8
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 26 3.8
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom... 25 5.0
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 5.0
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 6.6
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 25 6.6
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 6.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.6
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 209 bits (510), Expect = 2e-55
Identities = 95/157 (60%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Frame = +3
Query: 42 SYDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELT 221
S+DW+R FTMD ++ RAV E F+RLH+ IYRANRLVNW L++ +S++EV+ +++
Sbjct: 232 SFDWTREAFTMDENLSRAVVETFVRLHEENIIYRANRLVNWCTALQTTLSNLEVENVDVP 291
Query: 222 GRTLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKH 401
GRTLL +PGY++ VE GVL AY VEGSDE +++ATTR ET+LGD AVAVHP D RYKH
Sbjct: 292 GRTLLKVPGYDEPVEVGVLTSIAYAVEGSDERIVIATTRPETLLGDTAVAVHPQDPRYKH 351
Query: 402 LIGKNLIHPICNLKMPIIADE-YVDMAFGTGAVKITP 509
L GK + HP CN +PII D+ VDM FGTGAVKITP
Sbjct: 352 LHGKFVKHPFCNRSIPIICDDIIVDMEFGTGAVKITP 388
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 148 bits (358), Expect = 6e-37
Identities = 77/157 (49%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTG 224
+DW + +TMD + AVNEAFI L +AG IYRANR VNW L+SA+SDIEV+ ++
Sbjct: 160 FDWDNIFYTMDQNRSEAVNEAFISLFNAGLIYRANRFVNWCPKLESAVSDIEVESQQINK 219
Query: 225 RTLLAIPGYEQKVEFGVLVHFAYKVEGSD-EEVIVATTRVETMLGDVAVAVHPNDARYKH 401
+ VEFG L +Y++EGSD E++ V+TTR ET+ GD A+AV P+D RYK
Sbjct: 220 PVTKYVD--NTPVEFGWLYEISYQLEGSDNEQLNVSTTRPETIFGDRAIAVSPHDERYKK 277
Query: 402 LIGKNLIHP-ICNLKMPIIADEYVDMAFGTGAVKITP 509
+G+ + HP I +L +P+I D VD FGTG +KITP
Sbjct: 278 YVGRFVKHPLIDDLLIPVICDNAVDRHFGTGVLKITP 314
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 35.9 bits (79), Expect = 0.004
Identities = 28/116 (24%), Positives = 54/116 (46%)
Frame = +3
Query: 69 TMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPG 248
T+ PS +V F LH G +YR R++ +S + +S+ E +
Sbjct: 144 TLYPSFMESVWWVFKELHTKGKVYRGYRVMPYSTACTTPLSNFEAQQ------------N 191
Query: 249 YEQKVEFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHLIGKN 416
Y++ + ++V F + + + TT T+ ++A+AVHP D +Y ++ K+
Sbjct: 192 YKEVPDPAIVVAF-QSISDPEVSFLAWTTTPWTLPSNLALAVHP-DLQYIKILDKD 245
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 32.3 bits (70), Expect = 0.043
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Frame = +3
Query: 48 DWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAI--SDIEVDKLELT 221
DW TM A + F+ L I+R N+ V WS + +SA+ S+IE D ++
Sbjct: 175 DWPSRYITMSDKFEIAELKVFLSLLQKDLIFRQNKPVYWSSSSRSALAESEIEYDDNHVS 234
Query: 222 GRTLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHP--NDARY 395
P ++ E ++ + +V TT T+ ++A++ HP N Y
Sbjct: 235 TSIYFTFPVNSFSID---------GCEYNNVKALVWTTTPWTIPSNLALSYHPEINYGLY 285
Query: 396 KH 401
+H
Sbjct: 286 QH 287
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVD 206
+DW R T +P + F+++ G Y+A VNW + +++ +VD
Sbjct: 144 FDWDREISTCNPDYYKWSQYLFLQMFHKGLAYQAEATVNWDPVDCTVLANEQVD 197
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 0.71
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
+ATATS S+ ST + TSSS S+ T++ +T S + P+ S+ ST+
Sbjct: 205 SATATSSSLSSTAASNSATSSSLASSSLNS-TTSATATSSSISSTVSSSTPLTSSNSTTA 263
Query: 193 SEIA 182
+ A
Sbjct: 264 ATSA 267
Score = 24.6 bits (51), Expect = 8.7
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSS-EPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTS 197
T++ATS S+ ST + TSSS S+L + ++T S+ S +N +S+L++S
Sbjct: 173 TSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSA--TSSSLASS 230
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 0.93
Identities = 24/78 (30%), Positives = 32/78 (41%)
Frame = -3
Query: 478 AMSTYSSAMMGILRLQIG*IKFLPIKCLYLASLGWTATATSPSMVSTLVVATITSSSEPS 299
A+ST++S +Q FLP S A S ST V T ++S P+
Sbjct: 118 AISTFTSGKEASYAIQASPSTFLPDSTTTSGSQVSNAVEAS----STFVADTTSTSCNPA 173
Query: 298 TLYAK*TSTPNSTFCSYP 245
T+ TS ST C P
Sbjct: 174 TVLIVTTSGSTSTSCPPP 191
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.2
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = -3
Query: 397 LYLASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPV 218
+YL G T S S VS+ + +SSS PS+ T++P+S+ S ++
Sbjct: 115 VYLTGNGVLQTTVSSSSVSS--TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSS 172
Query: 217 NSNLSTSMS 191
+S+ S+S S
Sbjct: 173 SSSSSSSSS 181
Score = 24.6 bits (51), Expect = 8.7
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
T T TSPS S+ ++ +SSS S+ + +S+ +S+ S ++ +S+ S+S+
Sbjct: 149 TTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSV 208
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPV 218
T TS S S + T TSS++ ++ TST +T S P N PV
Sbjct: 250 TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPV 301
Score = 26.6 bits (56), Expect = 2.2
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
T TS S ST TSS+ S+ TST +T S P N PV + +
Sbjct: 358 TVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTS 417
Query: 193 SEIAL 179
S L
Sbjct: 418 SSTPL 422
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPV 218
T TS S ST TSS+ S+ TST +T S P N PV
Sbjct: 304 TVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPV 355
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 1.6
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = -3
Query: 394 YLASLGWTATATSPSMVS--TLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLP 221
YL+S ++++SPS S TL +++++SS PST + +++ + + S A+
Sbjct: 209 YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSS 268
Query: 220 VNSNLSTSMS 191
+S +S+S S
Sbjct: 269 SSSIISSSSS 278
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/61 (22%), Positives = 37/61 (60%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
+++++SP+ S+ + ++ +SSS S+ + + + +S+F S P ++ + +S+ +S
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSS 353
Query: 193 S 191
S
Sbjct: 354 S 354
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = -3
Query: 367 TATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMS 191
T+TS S +S+ V ++SSS PS+ + ++ + + S P ++ +S+LS+S S
Sbjct: 203 TSTSSSYLSSSSV--VSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSS 259
Score = 25.0 bits (52), Expect = 6.6
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -3
Query: 328 ATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMS 191
AT TSSSEPS ++++ ++TP+ T +++ P S L +S S
Sbjct: 76 ATPTSSSEPS-IFSE-SATPSETNSYSSPVSSYSDPATSQLPSSTS 119
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/59 (20%), Positives = 37/59 (62%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTS 197
+++++SP+ S+ + ++ +SSS P++ + +S+ +S+ +++ + +S+ S+S
Sbjct: 277 SSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSS 335
Score = 24.6 bits (51), Expect = 8.7
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = -3
Query: 391 LASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNS 212
+ S ++++TS S+ S+ +T +SSS S++ + +S+ +S + I++ +S
Sbjct: 240 IPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSS 299
Query: 211 NLSTS 197
STS
Sbjct: 300 PTSTS 304
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 2.9
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = -3
Query: 325 TITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMSEIALFNVQDQLTNRF 146
T S S PSTL TS N+ F S P + P+ SNL+++ + D T+
Sbjct: 284 TTPSDSRPSTL----TSLFNAFFSSMPDRPSSNEPMTSNLTSNSGSMTNSTSTDLPTSNL 339
Query: 145 AR*MSPA 125
+PA
Sbjct: 340 PSQNAPA 346
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 3.8
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPN-----STFCSYPGIANRVLPVNSN 209
T T SP S V I SSS ++ TSTP + C I P +N
Sbjct: 19 TPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTPFVENCSNLLCDLASIVEDSPPTLTN 78
Query: 208 LSTSMSEIALFNVQDQLTN 152
S S +L +++ ++N
Sbjct: 79 TSLSPHSFSLSDMESSMSN 97
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 274 TPNSTFCSYPGIANRVLPVNSNLSTSMSEIALFN 173
TP++T P A+ P+NSN+S S+ ++ N
Sbjct: 141 TPSTT--PPPSSASAPFPINSNISNSLDSVSQHN 172
>SPAP11E10.01 |||ornithine cyclodeaminase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -2
Query: 479 SHVHIFISNDGHLEIANRMNQILAYQVFIPG----IIRVDSHSHIPKHGFYSSSSHYHL 315
+ +H I D AN N +L +IPG + +V+ KHG S SSHY L
Sbjct: 38 TRLHYPIDEDNPSSTAN--NILLIMPCWIPGKFLGVKQVNVFPENTKHGLPSLSSHYLL 94
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 5.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = -2
Query: 395 IPGIIRVDSHSHIPKHGFYSSSSHY 321
+P ++ D+ +IP GF+ +S Y
Sbjct: 251 LPSVVADDAADYIPSEGFHHRASRY 275
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 292 YAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMSEIAL 179
Y K +TP++ F Y I+N PV + ++ IAL
Sbjct: 109 YPKKKATPDAVFAMYTTISNYPEPVTLVATGPLTNIAL 146
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 409 PIKCLYLASLGWTATATSPSMVSTLVVATITSSSEPSTLY 290
PI+ LYL + T T P++VS + + + S T++
Sbjct: 514 PIRALYLIAKNGTPTLKKPNLVSKNLKSFLNSCLTIDTIF 553
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 42 SYDWSRVRFTMDPSMCRA 95
SY+W+R F S+CRA
Sbjct: 913 SYNWARENFLQYKSLCRA 930
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.0 bits (52), Expect = 6.6
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTP---NSTFCSYPGIANRVLPVNSNLS 203
+++ +SPS S +I+SSS ST + TS+P +S+ S I + P S+L
Sbjct: 581 SSSTSSPSSTSL----SISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLM 636
Query: 202 TSMSEI 185
S S I
Sbjct: 637 ISSSSI 642
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,838
Number of Sequences: 5004
Number of extensions: 40056
Number of successful extensions: 168
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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