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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0084
         (510 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)             224   3e-59
SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09)            127   5e-30
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)                     31   0.73 
SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)             31   0.73 
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.96 
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               30   1.3  
SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_16552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   29   2.9  
SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)                  28   3.9  
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)                 28   5.1  
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 28   5.1  
SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score =  224 bits (548), Expect = 3e-59
 Identities = 101/142 (71%), Positives = 119/142 (83%)
 Frame = +3

Query: 84  MCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPGYEQKV 263
           +C AV EAF+RLH+ G IYR+ RLVNWSCTL SAISDIEVDK ELTGRT+L +PGY+ KV
Sbjct: 2   LCTAVTEAFVRLHEEGLIYRSKRLVNWSCTLNSAISDIEVDKKELTGRTMLTVPGYDHKV 61

Query: 264 EFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHLIGKNLIHPICNLK 443
           EFGVLVHF+Y VE S E++IVATTR+ETMLGD  +AVHP+DARYKHL GK  +HP CN +
Sbjct: 62  EFGVLVHFSYPVEDSAEKLIVATTRLETMLGDTGIAVHPDDARYKHLHGKYAVHPFCNRR 121

Query: 444 MPIIADEYVDMAFGTGAVKITP 509
           + I+ D+ VD AFGTGAVKITP
Sbjct: 122 LKIVCDDMVDPAFGTGAVKITP 143


>SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09)
          Length = 250

 Score =  127 bits (307), Expect = 5e-30
 Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
 Frame = +3

Query: 48  DWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGR 227
           DW+R  FTMD     AV   F+ L++ G IYR  +++NW    K+A+SD EV   +   +
Sbjct: 69  DWNRTHFTMDDEYYAAVIRVFVDLYNKGQIYRGVKMINWDPKAKTALSDEEVIHKQTNSK 128

Query: 228 TLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVI-VATTRVETMLGDVAVAVHPNDARYKHL 404
                           L +  YK++G  EE I +AT R ET+LGD A+ VHPND RY HL
Sbjct: 129 ----------------LYYVRYKLDGDKEEYITIATVRPETILGDTAICVHPNDERYAHL 172

Query: 405 IGKNLIHPICNLKMPIIADEYVDMAFGTGAVKITP 509
            G+    P+ N ++PII D+Y+D+ FGTGA+K+TP
Sbjct: 173 KGRKCFVPLVNREIPIIFDDYIDIEFGTGALKVTP 207


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
           T T+   S + +  +AT +++S PS   +  T++  ST      I++ VLP  +++ TS 
Sbjct: 779 TTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 838

Query: 193 SE 188
            E
Sbjct: 839 ME 840



 Score = 32.3 bits (70), Expect = 0.24
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = -3

Query: 373  TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
            T T+   S + +  +AT +++S PS   +  T++  ST      I++ VLP  +++ TS 
Sbjct: 830  TTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 889

Query: 193  SE 188
             E
Sbjct: 890  ME 891


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -3

Query: 376 WTATATSPSMVSTLVVATITSSSEPSTL--YAK*TSTPNST 260
           +TAT T+P+  +T   AT T+++  +T   YA  T+TPN+T
Sbjct: 103 YTATVTAPNATTTTPTATTTTTTTTTTTTPYAT-TTTPNTT 142



 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
           TAT T+P+  +    AT T+ +  +T     T+TPN+T  + P  A    P  + +  S 
Sbjct: 182 TATTTTPNTTTNTPNATTTTPTATTTTPNATTTTPNTT-TTTPN-ATTTTPTATTMQQSF 239

Query: 193 SEIA 182
           + ++
Sbjct: 240 NRVS 243



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 370 ATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
           AT T+P+  +T    T TS +  +T     T+TPN+T
Sbjct: 134 ATTTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTT 170



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 367 TATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
           T T+P+  +T   AT T+ +  +T     T+TPN+T
Sbjct: 163 TTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPNAT 198



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 370 ATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
           AT T+P+  +T    T T+ +  +T     T+TPN+T
Sbjct: 155 ATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTT 191



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
           TAT T+P+  +T    T  + +  +T     T+TPN+T
Sbjct: 175 TATTTTPTATTTTPNTTTNTPNATTTTPTATTTTPNAT 212


>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
          Length = 1249

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
 Frame = -3

Query: 358 SPSMVSTLV--VATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMSEI 185
           S S + T +  V+  T    PSTL +    T +    S  G+++RVLP  S+ ST +   
Sbjct: 161 SSSNIQTFLQTVSKTTLLQAPSTLMSTYGDTLHHFSVSVNGVSSRVLPSASSGSTEVYSS 220

Query: 184 ALFNVQDQLTNRFAR*MSPASCNLMKASLTARHIDGSIVKRTL 56
           ALF     +         P S       LT   +  +I   T+
Sbjct: 221 ALFTFPSSMVATSHALSGPGSTLSRTVVLTLSSVTQAITYSTI 263


>SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)
          Length = 489

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +3

Query: 240 IPGYEQKVEFGV-----LVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHL 404
           +P +++K+ + V     L H  + +EG +  ++ AT R ETM G     V P D + ++L
Sbjct: 370 VPPFKEKLRYSVIPELFLSHANFVLEGKNVYLVAATLRPETMYGQTNCWVRP-DMKVQYL 428


>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS YHL+    ++ R  N  S+ YL++
Sbjct: 254 HMTSYAQYNSSSDYHLMYHMTSYAR-YNSSSDYYLMY 289



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS+YHL+    ++  + N  S+ YL++
Sbjct: 218 HMTSYAQYNSSSYYHLMYHMTSYA-QYNSSSDYYLMY 253



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS YHL+    ++  + N  S+ YL++
Sbjct: 182 HMTSYAQYNSSSDYHLMYHMTSYA-QYNSSSDYYLMY 217



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS YHL+    ++ R  N  S  YL++
Sbjct: 362 HMTSYAQYNSSSDYHLMYHMTSYAR-FNSSSYYYLMY 397



 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS+YHL+    ++  + N  S+ +L++
Sbjct: 344 HMTSYAQYNSSSYYHLMYHMTSYA-QYNSSSDYHLMY 379



 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS+Y+L+    ++  + N  S+ YL++
Sbjct: 146 HMTSYAQYNSSSYYYLMYHMTSYA-QYNSSSDYYLMY 181



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
           H+  +  Y+SSS YHL+    ++  + N  S  YL++
Sbjct: 290 HMTSYAQYNSSSDYHLMYHMTSYA-QYNSSSYYYLMY 325


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
 Frame = -3

Query: 490 PVPKAMSTYSSAMMGILRLQIG*IKFLPIKCLYLASLGWTATATSPSMVSTLVVATITSS 311
           PVP   +T+S +++    L    +   PI       LG T+ A+     S +V AT ++S
Sbjct: 175 PVPVVSATFSPSVVVASALVAPSVVASPISSEPSVKLGSTSAAS-----SVVVAATPSTS 229

Query: 310 SEPSTLYAK*TSTPNSTFCSYPGIA--NRVLPVNSNLSTSMSEIA 182
             P+T      +  +++  S P +A  +   PVN  +  ++  +A
Sbjct: 230 PVPATFVPSLPTVASASTLSAPSVAASSIATPVNKTVVATLKTLA 274


>SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = -2

Query: 425 MNQILAYQVFIPGIIRVDSHSHIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLL 255
           ++ +L+   F   ++R D+ +++P      S   YH L +  N+  +    +E+ L+
Sbjct: 91  LSNLLSSSDFTENVLRWDTQAYVPCENALGSYQSYHNLTQPINYFTRYGNEAEVMLV 147


>SB_16552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/25 (44%), Positives = 22/25 (88%)
 Frame = -3

Query: 337 LVVATITSSSEPSTLYAK*TSTPNS 263
           ++V++  SSS+P+T++A+ T+TPN+
Sbjct: 90  VIVSSKLSSSKPATIFAQETNTPNN 114


>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 537

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 485 SESHVHIFISNDGHLEIANRM---NQILAYQVFIPGIIRVDSHSHIPKHGFYSSSSHYHL 315
           S+ H H+  +   + +I+  +     +  + V   G+   D H H+   G   S  H+H+
Sbjct: 119 SDRHFHVLSTCGDYTDISRVVVWFRLLRHFHVLCTGVDFSDRHFHVLSTGVDYSDRHFHV 178

Query: 314 LIRAFNF 294
           L+   +F
Sbjct: 179 LLLGLDF 185


>SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)
          Length = 844

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -2

Query: 200 FYVRDSALQRTGPVDQSVRTIDVSSVVQ---SYEGLINSSAH*WVHREADSGPVVGRTDP 30
           FY+ D  +    P  +  RT   S+  +   S EG+ +SS+    HRE  S P    TD 
Sbjct: 271 FYIDDYGMLCPVPRSEEARTAAESTTYENTASDEGVDSSSSKDHAHRERGSSPEATTTDS 330

Query: 29  ---PPPNSA 12
               PP+ A
Sbjct: 331 GYISPPDMA 339


>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
          Length = 925

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -3

Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TST---PNSTFCSYPGIANRVLPV 218
           A++ W     + ++  T  V   T   +PST+Y   ++T    N+T    P    R   V
Sbjct: 150 ATMSWNPYTINQTLSLTKQVNNATELRKPSTVYRTLSATSHLDNTTKLLTPSTVYRTFSV 209

Query: 217 NSNLSTS 197
           NS+L  +
Sbjct: 210 NSHLDNA 216


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 60   VRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDI 197
            VRF + P+    V   ++RLH+A  I++       +  L+  +SD+
Sbjct: 1032 VRFDVKPTPSPEVTSYYVRLHEANGIWKTEPNRRNASDLQELLSDL 1077


>SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443 LEIANRMNQILAYQVFIPGIIRVDSHSHI--PKHGFYSSSSHYHLLIRAFNFVRK 285
           L  A R   +L  Q  +P   R  +  H+  P H  Y   S+Y+  +R+ N  ++
Sbjct: 43  LRQATRGGAMLIRQSLLPSHARDQAIEHVGRPHHPIYHKRSNYNAAVRSVNLCQE 97


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = -3

Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSN 209
           A++  TATAT+ + V+    AT+T+++  +T  A  T+T  +T  +    A     V + 
Sbjct: 671 ATVTVTATATATATVTVTATATVTATA-TATATATATATAATTTATATATATVTATVTAA 729

Query: 208 LSTSMSEIALFNVQDQLT 155
            S + +  A   V   +T
Sbjct: 730 ASATAAVTATVTVTVTVT 747


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,899
Number of Sequences: 59808
Number of extensions: 298161
Number of successful extensions: 1077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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