BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= cesb0084 (510 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.) 224 3e-59 SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09) 127 5e-30 SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24 SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55 SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 31 0.73 SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8) 31 0.73 SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96 SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 1.3 SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7 SB_16552| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7 SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 2.9 SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18) 28 3.9 SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09) 28 5.1 SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 5.1 SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0 SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0 >SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 498 Score = 224 bits (548), Expect = 3e-59 Identities = 101/142 (71%), Positives = 119/142 (83%) Frame = +3 Query: 84 MCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPGYEQKV 263 +C AV EAF+RLH+ G IYR+ RLVNWSCTL SAISDIEVDK ELTGRT+L +PGY+ KV Sbjct: 2 LCTAVTEAFVRLHEEGLIYRSKRLVNWSCTLNSAISDIEVDKKELTGRTMLTVPGYDHKV 61 Query: 264 EFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHLIGKNLIHPICNLK 443 EFGVLVHF+Y VE S E++IVATTR+ETMLGD +AVHP+DARYKHL GK +HP CN + Sbjct: 62 EFGVLVHFSYPVEDSAEKLIVATTRLETMLGDTGIAVHPDDARYKHLHGKYAVHPFCNRR 121 Query: 444 MPIIADEYVDMAFGTGAVKITP 509 + I+ D+ VD AFGTGAVKITP Sbjct: 122 LKIVCDDMVDPAFGTGAVKITP 143 >SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09) Length = 250 Score = 127 bits (307), Expect = 5e-30 Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 1/155 (0%) Frame = +3 Query: 48 DWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGR 227 DW+R FTMD AV F+ L++ G IYR +++NW K+A+SD EV + + Sbjct: 69 DWNRTHFTMDDEYYAAVIRVFVDLYNKGQIYRGVKMINWDPKAKTALSDEEVIHKQTNSK 128 Query: 228 TLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVI-VATTRVETMLGDVAVAVHPNDARYKHL 404 L + YK++G EE I +AT R ET+LGD A+ VHPND RY HL Sbjct: 129 ----------------LYYVRYKLDGDKEEYITIATVRPETILGDTAICVHPNDERYAHL 172 Query: 405 IGKNLIHPICNLKMPIIADEYVDMAFGTGAVKITP 509 G+ P+ N ++PII D+Y+D+ FGTGA+K+TP Sbjct: 173 KGRKCFVPLVNREIPIIFDDYIDIEFGTGALKVTP 207 >SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1067 Score = 32.3 bits (70), Expect = 0.24 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = -3 Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194 T T+ S + + +AT +++S PS + T++ ST I++ VLP +++ TS Sbjct: 779 TTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 838 Query: 193 SE 188 E Sbjct: 839 ME 840 Score = 32.3 bits (70), Expect = 0.24 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = -3 Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194 T T+ S + + +AT +++S PS + T++ ST I++ VLP +++ TS Sbjct: 830 TTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 889 Query: 193 SE 188 E Sbjct: 890 ME 891 >SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 286 Score = 31.1 bits (67), Expect = 0.55 Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%) Frame = -3 Query: 376 WTATATSPSMVSTLVVATITSSSEPSTL--YAK*TSTPNST 260 +TAT T+P+ +T AT T+++ +T YA T+TPN+T Sbjct: 103 YTATVTAPNATTTTPTATTTTTTTTTTTTPYAT-TTTPNTT 142 Score = 28.3 bits (60), Expect = 3.9 Identities = 18/64 (28%), Positives = 32/64 (50%) Frame = -3 Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194 TAT T+P+ + AT T+ + +T T+TPN+T + P A P + + S Sbjct: 182 TATTTTPNTTTNTPNATTTTPTATTTTPNATTTTPNTT-TTTPN-ATTTTPTATTMQQSF 239 Query: 193 SEIA 182 + ++ Sbjct: 240 NRVS 243 Score = 27.5 bits (58), Expect = 6.8 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -3 Query: 370 ATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260 AT T+P+ +T T TS + +T T+TPN+T Sbjct: 134 ATTTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTT 170 Score = 27.5 bits (58), Expect = 6.8 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 367 TATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260 T T+P+ +T AT T+ + +T T+TPN+T Sbjct: 163 TTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPNAT 198 Score = 27.1 bits (57), Expect = 9.0 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -3 Query: 370 ATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260 AT T+P+ +T T T+ + +T T+TPN+T Sbjct: 155 ATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTT 191 Score = 27.1 bits (57), Expect = 9.0 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -3 Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260 TAT T+P+ +T T + + +T T+TPN+T Sbjct: 175 TATTTTPTATTTTPNTTTNTPNATTTTPTATTTTPNAT 212 >SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) Length = 1249 Score = 30.7 bits (66), Expect = 0.73 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 2/103 (1%) Frame = -3 Query: 358 SPSMVSTLV--VATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMSEI 185 S S + T + V+ T PSTL + T + S G+++RVLP S+ ST + Sbjct: 161 SSSNIQTFLQTVSKTTLLQAPSTLMSTYGDTLHHFSVSVNGVSSRVLPSASSGSTEVYSS 220 Query: 184 ALFNVQDQLTNRFAR*MSPASCNLMKASLTARHIDGSIVKRTL 56 ALF + P S LT + +I T+ Sbjct: 221 ALFTFPSSMVATSHALSGPGSTLSRTVVLTLSSVTQAITYSTI 263 >SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8) Length = 489 Score = 30.7 bits (66), Expect = 0.73 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%) Frame = +3 Query: 240 IPGYEQKVEFGV-----LVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHL 404 +P +++K+ + V L H + +EG + ++ AT R ETM G V P D + ++L Sbjct: 370 VPPFKEKLRYSVIPELFLSHANFVLEGKNVYLVAATLRPETMYGQTNCWVRP-DMKVQYL 428 >SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 469 Score = 30.3 bits (65), Expect = 0.96 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS YHL+ ++ R N S+ YL++ Sbjct: 254 HMTSYAQYNSSSDYHLMYHMTSYAR-YNSSSDYYLMY 289 Score = 29.9 bits (64), Expect = 1.3 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS+YHL+ ++ + N S+ YL++ Sbjct: 218 HMTSYAQYNSSSYYHLMYHMTSYA-QYNSSSDYYLMY 253 Score = 28.7 bits (61), Expect = 2.9 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS YHL+ ++ + N S+ YL++ Sbjct: 182 HMTSYAQYNSSSDYHLMYHMTSYA-QYNSSSDYYLMY 217 Score = 28.7 bits (61), Expect = 2.9 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS YHL+ ++ R N S YL++ Sbjct: 362 HMTSYAQYNSSSDYHLMYHMTSYAR-FNSSSYYYLMY 397 Score = 27.9 bits (59), Expect = 5.1 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS+YHL+ ++ + N S+ +L++ Sbjct: 344 HMTSYAQYNSSSYYHLMYHMTSYA-QYNSSSDYHLMY 379 Score = 27.5 bits (58), Expect = 6.8 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS+Y+L+ ++ + N S+ YL++ Sbjct: 146 HMTSYAQYNSSSYYYLMYHMTSYA-QYNSSSDYYLMY 181 Score = 27.1 bits (57), Expect = 9.0 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = -2 Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252 H+ + Y+SSS YHL+ ++ + N S YL++ Sbjct: 290 HMTSYAQYNSSSDYHLMYHMTSYA-QYNSSSYYYLMY 325 >SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) Length = 1079 Score = 29.9 bits (64), Expect = 1.3 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Frame = -3 Query: 490 PVPKAMSTYSSAMMGILRLQIG*IKFLPIKCLYLASLGWTATATSPSMVSTLVVATITSS 311 PVP +T+S +++ L + PI LG T+ A+ S +V AT ++S Sbjct: 175 PVPVVSATFSPSVVVASALVAPSVVASPISSEPSVKLGSTSAAS-----SVVVAATPSTS 229 Query: 310 SEPSTLYAK*TSTPNSTFCSYPGIA--NRVLPVNSNLSTSMSEIA 182 P+T + +++ S P +A + PVN + ++ +A Sbjct: 230 PVPATFVPSLPTVASASTLSAPSVAASSIATPVNKTVVATLKTLA 274 >SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 478 Score = 29.5 bits (63), Expect = 1.7 Identities = 12/57 (21%), Positives = 28/57 (49%) Frame = -2 Query: 425 MNQILAYQVFIPGIIRVDSHSHIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLL 255 ++ +L+ F ++R D+ +++P S YH L + N+ + +E+ L+ Sbjct: 91 LSNLLSSSDFTENVLRWDTQAYVPCENALGSYQSYHNLTQPINYFTRYGNEAEVMLV 147 >SB_16552| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 294 Score = 29.5 bits (63), Expect = 1.7 Identities = 11/25 (44%), Positives = 22/25 (88%) Frame = -3 Query: 337 LVVATITSSSEPSTLYAK*TSTPNS 263 ++V++ SSS+P+T++A+ T+TPN+ Sbjct: 90 VIVSSKLSSSKPATIFAQETNTPNN 114 >SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) Length = 537 Score = 28.7 bits (61), Expect = 2.9 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -2 Query: 485 SESHVHIFISNDGHLEIANRM---NQILAYQVFIPGIIRVDSHSHIPKHGFYSSSSHYHL 315 S+ H H+ + + +I+ + + + V G+ D H H+ G S H+H+ Sbjct: 119 SDRHFHVLSTCGDYTDISRVVVWFRLLRHFHVLCTGVDFSDRHFHVLSTGVDYSDRHFHV 178 Query: 314 LIRAFNF 294 L+ +F Sbjct: 179 LLLGLDF 185 >SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18) Length = 844 Score = 28.3 bits (60), Expect = 3.9 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Frame = -2 Query: 200 FYVRDSALQRTGPVDQSVRTIDVSSVVQ---SYEGLINSSAH*WVHREADSGPVVGRTDP 30 FY+ D + P + RT S+ + S EG+ +SS+ HRE S P TD Sbjct: 271 FYIDDYGMLCPVPRSEEARTAAESTTYENTASDEGVDSSSSKDHAHRERGSSPEATTTDS 330 Query: 29 ---PPPNSA 12 PP+ A Sbjct: 331 GYISPPDMA 339 >SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09) Length = 925 Score = 27.9 bits (59), Expect = 5.1 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -3 Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TST---PNSTFCSYPGIANRVLPV 218 A++ W + ++ T V T +PST+Y ++T N+T P R V Sbjct: 150 ATMSWNPYTINQTLSLTKQVNNATELRKPSTVYRTLSATSHLDNTTKLLTPSTVYRTFSV 209 Query: 217 NSNLSTS 197 NS+L + Sbjct: 210 NSHLDNA 216 >SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) Length = 1101 Score = 27.9 bits (59), Expect = 5.1 Identities = 13/46 (28%), Positives = 24/46 (52%) Frame = +3 Query: 60 VRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDI 197 VRF + P+ V ++RLH+A I++ + L+ +SD+ Sbjct: 1032 VRFDVKPTPSPEVTSYYVRLHEANGIWKTEPNRRNASDLQELLSDL 1077 >SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 208 Score = 27.1 bits (57), Expect = 9.0 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Frame = -2 Query: 443 LEIANRMNQILAYQVFIPGIIRVDSHSHI--PKHGFYSSSSHYHLLIRAFNFVRK 285 L A R +L Q +P R + H+ P H Y S+Y+ +R+ N ++ Sbjct: 43 LRQATRGGAMLIRQSLLPSHARDQAIEHVGRPHHPIYHKRSNYNAAVRSVNLCQE 97 >SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 778 Score = 27.1 bits (57), Expect = 9.0 Identities = 21/78 (26%), Positives = 38/78 (48%) Frame = -3 Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSN 209 A++ TATAT+ + V+ AT+T+++ +T A T+T +T + A V + Sbjct: 671 ATVTVTATATATATVTVTATATVTATA-TATATATATATAATTTATATATATVTATVTAA 729 Query: 208 LSTSMSEIALFNVQDQLT 155 S + + A V +T Sbjct: 730 ASATAAVTATVTVTVTVT 747 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,536,899 Number of Sequences: 59808 Number of extensions: 298161 Number of successful extensions: 1077 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 963 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1070 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1123894172 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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