Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0084
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.) 224 3e-59
SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09) 127 5e-30
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 31 0.73
SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8) 31 0.73
SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.96
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 1.3
SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_16552| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 2.9
SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18) 28 3.9
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09) 28 5.1
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 5.1
SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_52523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 224 bits (548), Expect = 3e-59
Identities = 101/142 (71%), Positives = 119/142 (83%)
Frame = +3
Query: 84 MCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPGYEQKV 263
+C AV EAF+RLH+ G IYR+ RLVNWSCTL SAISDIEVDK ELTGRT+L +PGY+ KV
Sbjct: 2 LCTAVTEAFVRLHEEGLIYRSKRLVNWSCTLNSAISDIEVDKKELTGRTMLTVPGYDHKV 61
Query: 264 EFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHLIGKNLIHPICNLK 443
EFGVLVHF+Y VE S E++IVATTR+ETMLGD +AVHP+DARYKHL GK +HP CN +
Sbjct: 62 EFGVLVHFSYPVEDSAEKLIVATTRLETMLGDTGIAVHPDDARYKHLHGKYAVHPFCNRR 121
Query: 444 MPIIADEYVDMAFGTGAVKITP 509
+ I+ D+ VD AFGTGAVKITP
Sbjct: 122 LKIVCDDMVDPAFGTGAVKITP 143
>SB_609| Best HMM Match : tRNA-synt_1 (HMM E-Value=2.2e-09)
Length = 250
Score = 127 bits (307), Expect = 5e-30
Identities = 65/155 (41%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Frame = +3
Query: 48 DWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGR 227
DW+R FTMD AV F+ L++ G IYR +++NW K+A+SD EV + +
Sbjct: 69 DWNRTHFTMDDEYYAAVIRVFVDLYNKGQIYRGVKMINWDPKAKTALSDEEVIHKQTNSK 128
Query: 228 TLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVI-VATTRVETMLGDVAVAVHPNDARYKHL 404
L + YK++G EE I +AT R ET+LGD A+ VHPND RY HL
Sbjct: 129 ----------------LYYVRYKLDGDKEEYITIATVRPETILGDTAICVHPNDERYAHL 172
Query: 405 IGKNLIHPICNLKMPIIADEYVDMAFGTGAVKITP 509
G+ P+ N ++PII D+Y+D+ FGTGA+K+TP
Sbjct: 173 KGRKCFVPLVNREIPIIFDDYIDIEFGTGALKVTP 207
>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1067
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
T T+ S + + +AT +++S PS + T++ ST I++ VLP +++ TS
Sbjct: 779 TTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 838
Query: 193 SE 188
E
Sbjct: 839 ME 840
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
T T+ S + + +AT +++S PS + T++ ST I++ VLP +++ TS
Sbjct: 830 TTTSVLTSSMESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSS 889
Query: 193 SE 188
E
Sbjct: 890 ME 891
>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Frame = -3
Query: 376 WTATATSPSMVSTLVVATITSSSEPSTL--YAK*TSTPNST 260
+TAT T+P+ +T AT T+++ +T YA T+TPN+T
Sbjct: 103 YTATVTAPNATTTTPTATTTTTTTTTTTTPYAT-TTTPNTT 142
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
TAT T+P+ + AT T+ + +T T+TPN+T + P A P + + S
Sbjct: 182 TATTTTPNTTTNTPNATTTTPTATTTTPNATTTTPNTT-TTTPN-ATTTTPTATTMQQSF 239
Query: 193 SEIA 182
+ ++
Sbjct: 240 NRVS 243
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 370 ATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
AT T+P+ +T T TS + +T T+TPN+T
Sbjct: 134 ATTTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTT 170
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 367 TATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
T T+P+ +T AT T+ + +T T+TPN+T
Sbjct: 163 TTTTPNTTTTTPTATTTTPTATTTTPNTTTNTPNAT 198
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 370 ATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
AT T+P+ +T T T+ + +T T+TPN+T
Sbjct: 155 ATTTTPNTTTTTPNTTTTTPTATTTTPTATTTTPNTT 191
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
TAT T+P+ +T T + + +T T+TPN+T
Sbjct: 175 TATTTTPTATTTTPNTTTNTPNATTTTPTATTTTPNAT 212
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 30.7 bits (66), Expect = 0.73
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Frame = -3
Query: 358 SPSMVSTLV--VATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMSEI 185
S S + T + V+ T PSTL + T + S G+++RVLP S+ ST +
Sbjct: 161 SSSNIQTFLQTVSKTTLLQAPSTLMSTYGDTLHHFSVSVNGVSSRVLPSASSGSTEVYSS 220
Query: 184 ALFNVQDQLTNRFAR*MSPASCNLMKASLTARHIDGSIVKRTL 56
ALF + P S LT + +I T+
Sbjct: 221 ALFTFPSSMVATSHALSGPGSTLSRTVVLTLSSVTQAITYSTI 263
>SB_15381| Best HMM Match : Homoserine_dh (HMM E-Value=6.8)
Length = 489
Score = 30.7 bits (66), Expect = 0.73
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 240 IPGYEQKVEFGV-----LVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYKHL 404
+P +++K+ + V L H + +EG + ++ AT R ETM G V P D + ++L
Sbjct: 370 VPPFKEKLRYSVIPELFLSHANFVLEGKNVYLVAATLRPETMYGQTNCWVRP-DMKVQYL 428
>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 30.3 bits (65), Expect = 0.96
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS YHL+ ++ R N S+ YL++
Sbjct: 254 HMTSYAQYNSSSDYHLMYHMTSYAR-YNSSSDYYLMY 289
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS+YHL+ ++ + N S+ YL++
Sbjct: 218 HMTSYAQYNSSSYYHLMYHMTSYA-QYNSSSDYYLMY 253
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS YHL+ ++ + N S+ YL++
Sbjct: 182 HMTSYAQYNSSSDYHLMYHMTSYA-QYNSSSDYYLMY 217
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS YHL+ ++ R N S YL++
Sbjct: 362 HMTSYAQYNSSSDYHLMYHMTSYAR-FNSSSYYYLMY 397
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS+YHL+ ++ + N S+ +L++
Sbjct: 344 HMTSYAQYNSSSYYHLMYHMTSYA-QYNSSSDYHLMY 379
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS+Y+L+ ++ + N S+ YL++
Sbjct: 146 HMTSYAQYNSSSYYYLMYHMTSYA-QYNSSSDYYLMY 181
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 362 HIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLF 252
H+ + Y+SSS YHL+ ++ + N S YL++
Sbjct: 290 HMTSYAQYNSSSDYHLMYHMTSYA-QYNSSSYYYLMY 325
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = -3
Query: 490 PVPKAMSTYSSAMMGILRLQIG*IKFLPIKCLYLASLGWTATATSPSMVSTLVVATITSS 311
PVP +T+S +++ L + PI LG T+ A+ S +V AT ++S
Sbjct: 175 PVPVVSATFSPSVVVASALVAPSVVASPISSEPSVKLGSTSAAS-----SVVVAATPSTS 229
Query: 310 SEPSTLYAK*TSTPNSTFCSYPGIA--NRVLPVNSNLSTSMSEIA 182
P+T + +++ S P +A + PVN + ++ +A
Sbjct: 230 PVPATFVPSLPTVASASTLSAPSVAASSIATPVNKTVVATLKTLA 274
>SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = -2
Query: 425 MNQILAYQVFIPGIIRVDSHSHIPKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLL 255
++ +L+ F ++R D+ +++P S YH L + N+ + +E+ L+
Sbjct: 91 LSNLLSSSDFTENVLRWDTQAYVPCENALGSYQSYHNLTQPINYFTRYGNEAEVMLV 147
>SB_16552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/25 (44%), Positives = 22/25 (88%)
Frame = -3
Query: 337 LVVATITSSSEPSTLYAK*TSTPNS 263
++V++ SSS+P+T++A+ T+TPN+
Sbjct: 90 VIVSSKLSSSKPATIFAQETNTPNN 114
>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 537
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 485 SESHVHIFISNDGHLEIANRM---NQILAYQVFIPGIIRVDSHSHIPKHGFYSSSSHYHL 315
S+ H H+ + + +I+ + + + V G+ D H H+ G S H+H+
Sbjct: 119 SDRHFHVLSTCGDYTDISRVVVWFRLLRHFHVLCTGVDFSDRHFHVLSTGVDYSDRHFHV 178
Query: 314 LIRAFNF 294
L+ +F
Sbjct: 179 LLLGLDF 185
>SB_32678| Best HMM Match : HEAT (HMM E-Value=9.6e-18)
Length = 844
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -2
Query: 200 FYVRDSALQRTGPVDQSVRTIDVSSVVQ---SYEGLINSSAH*WVHREADSGPVVGRTDP 30
FY+ D + P + RT S+ + S EG+ +SS+ HRE S P TD
Sbjct: 271 FYIDDYGMLCPVPRSEEARTAAESTTYENTASDEGVDSSSSKDHAHRERGSSPEATTTDS 330
Query: 29 ---PPPNSA 12
PP+ A
Sbjct: 331 GYISPPDMA 339
>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
Length = 925
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -3
Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TST---PNSTFCSYPGIANRVLPV 218
A++ W + ++ T V T +PST+Y ++T N+T P R V
Sbjct: 150 ATMSWNPYTINQTLSLTKQVNNATELRKPSTVYRTLSATSHLDNTTKLLTPSTVYRTFSV 209
Query: 217 NSNLSTS 197
NS+L +
Sbjct: 210 NSHLDNA 216
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 60 VRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDI 197
VRF + P+ V ++RLH+A I++ + L+ +SD+
Sbjct: 1032 VRFDVKPTPSPEVTSYYVRLHEANGIWKTEPNRRNASDLQELLSDL 1077
>SB_16032| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 27.1 bits (57), Expect = 9.0
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -2
Query: 443 LEIANRMNQILAYQVFIPGIIRVDSHSHI--PKHGFYSSSSHYHLLIRAFNFVRK 285
L A R +L Q +P R + H+ P H Y S+Y+ +R+ N ++
Sbjct: 43 LRQATRGGAMLIRQSLLPSHARDQAIEHVGRPHHPIYHKRSNYNAAVRSVNLCQE 97
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = -3
Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSN 209
A++ TATAT+ + V+ AT+T+++ +T A T+T +T + A V +
Sbjct: 671 ATVTVTATATATATVTVTATATVTATA-TATATATATATAATTTATATATATVTATVTAA 729
Query: 208 LSTSMSEIALFNVQDQLT 155
S + + A V +T
Sbjct: 730 ASATAAVTATVTVTVTVT 747
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,899
Number of Sequences: 59808
Number of extensions: 298161
Number of successful extensions: 1077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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