Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0084
(510 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 248 2e-66
U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna synt... 109 1e-24
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 32 0.21
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 32 0.21
Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical pr... 31 0.49
AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA s... 31 0.49
AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding... 31 0.64
Z54270-9|CAO82016.1| 787|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 30 1.1
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr... 29 1.5
U41277-3|AAA82474.1| 154|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 2.0
AL132862-28|CAB60545.2| 610|Caenorhabditis elegans Hypothetical... 29 2.6
Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical pr... 27 6.0
U61951-1|AAB03157.2| 530|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z70311-3|CAA94372.1| 546|Caenorhabditis elegans Hypothetical pr... 27 7.9
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 27 7.9
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical ... 27 7.9
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 248 bits (607), Expect = 2e-66
Identities = 111/158 (70%), Positives = 133/158 (84%), Gaps = 1/158 (0%)
Frame = +3
Query: 39 SSYDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLEL 218
+S DW R FTMDP MCRAV EAFIR+H++G IYR+NRLVNWSC L+SAISDIEVDK EL
Sbjct: 219 ASVDWDRAVFTMDPKMCRAVTEAFIRMHESGTIYRSNRLVNWSCALRSAISDIEVDKKEL 278
Query: 219 TGRTLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPNDARYK 398
TG TL+A+PGY++K+EFGVL FAYK++GSDEE++V+TTR+ETMLGD VAVHP+D RYK
Sbjct: 279 TGSTLIAVPGYDKKIEFGVLNSFAYKIQGSDEEIVVSTTRIETMLGDSGVAVHPDDQRYK 338
Query: 399 HLIGKNLIHP-ICNLKMPIIADEYVDMAFGTGAVKITP 509
HL+GK IHP I +PI AD +V+M FGTGAVKITP
Sbjct: 339 HLVGKQCIHPFIPTRNLPIFADSFVEMEFGTGAVKITP 376
>U53155-2|AAC48266.2| 918|Caenorhabditis elegans Valyl trna
synthetase protein 1 protein.
Length = 918
Score = 109 bits (262), Expect = 1e-24
Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Frame = +3
Query: 39 SSYDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLEL 218
+S DW++ +T+D AV +AF L I R RLV+W TL S +S EV+++++
Sbjct: 97 ASLDWTQSYYTLDSKFSEAVTKAFCILEQEDLITRGKRLVHWCPTLSSTLSSQEVNRIDV 156
Query: 219 TGR---TLLAIPGYEQKVEFGVLVHFAYKVEGSDEEVI-VATTRVETMLGDVAVAVHPND 386
L + G ++V+FG + Y + S+ E I V TTR ET+ DVAVAVHP D
Sbjct: 157 PSDGYINLSSSSGTRRRVKFGQMHVIRYNLVDSESEFIEVGTTRPETLFADVAVAVHPED 216
Query: 387 ARYKHLIGKNLIHPIC-NLKMPIIADEYVDMAFGTGAVKITP 509
RY GK++ P+ K+ +I D V + GTGAVKITP
Sbjct: 217 DRYSKFHGKHVWSPVTPGRKLFVITDSAVSVEKGTGAVKITP 258
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 48 DWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVD 206
DW + T PS A + F +L + +YR+ + V WS + +A+++ E++
Sbjct: 186 DWEKPYVTKSPSYVAAQLDIFAKLVEQKLVYRSFKPVYWSPSSNTALAESELE 238
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 32.3 bits (70), Expect = 0.21
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 48 DWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVD 206
DW + T PS A + F +L + +YR+ + V WS + +A+++ E++
Sbjct: 186 DWEKPYVTKSPSYVAAQLDIFAKLVEQKLVYRSFKPVYWSPSSNTALAESELE 238
>Z73912-3|CAE18063.1| 828|Caenorhabditis elegans Hypothetical
protein ZK524.3b protein.
Length = 828
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVD 206
+DW + T +P R F +L + G + R + VNW K+ ++ ++D
Sbjct: 112 FDWEKEISTCEPEFFRWTQWIFCKLFEYGLVKRTSSEVNWDPIDKTVLAAEQID 165
>Z73912-2|CAA98144.4| 859|Caenorhabditis elegans Hypothetical
protein ZK524.3a protein.
Length = 859
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVD 206
+DW + T +P R F +L + G + R + VNW K+ ++ ++D
Sbjct: 143 FDWEKEISTCEPEFFRWTQWIFCKLFEYGLVKRTSSEVNWDPIDKTVLAAEQID 196
>AB096633-1|BAC76733.1| 828|Caenorhabditis elegans leucyl-tRNA
synthetase (mitochondrial)protein.
Length = 828
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVD 206
+DW + T +P R F +L + G + R + VNW K+ ++ ++D
Sbjct: 112 FDWEKEISTCEPEFFRWTQWIFCKLFEYGLVKRTSSEVNWDPIDKTVLAAEQID 165
>AF003141-3|AAK21484.1| 135|Caenorhabditis elegans Lipid binding
protein protein 6 protein.
Length = 135
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +3
Query: 129 GDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPGYEQKVEFGVLVHFAYKVEGS 308
GD++ +N+ + T S E D+ GRT+ ++ +E G +H K++ S
Sbjct: 47 GDLWYSNQYSTFKNTTLSFKLGQEFDETTPDGRTVKSVVNFEN----GKFIHIQKKIKDS 102
Query: 309 DEEVIV 326
D+E I+
Sbjct: 103 DKESII 108
>Z54270-9|CAO82016.1| 787|Caenorhabditis elegans Hypothetical
protein F11C1.5c protein.
Length = 787
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTG 224
Y ++ T P + AV E +++ + Y A +VN+S K +SD E D + T
Sbjct: 271 YAYNSEASTSRPRIGTAVVENTLKIWNENPSYSAGEIVNFSYPAKEVLSDSEKDLIN-TF 329
Query: 225 RTLLAIPGYEQKVE 266
+T + +E+ E
Sbjct: 330 KTKFELSTHERTRE 343
>Z54270-5|CAA91031.2| 1339|Caenorhabditis elegans Hypothetical
protein F11C1.5b protein.
Length = 1339
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTG 224
Y ++ T P + AV E +++ + Y A +VN+S K +SD E D + T
Sbjct: 271 YAYNSEASTSRPRIGTAVVENTLKIWNENPSYSAGEIVNFSYPAKEVLSDSEKDLIN-TF 329
Query: 225 RTLLAIPGYEQKVE 266
+T + +E+ E
Sbjct: 330 KTKFELSTHERTRE 343
>Z54270-4|CAA91030.2| 1804|Caenorhabditis elegans Hypothetical
protein F11C1.5a protein.
Length = 1804
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +3
Query: 45 YDWSRVRFTMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTG 224
Y ++ T P + AV E +++ + Y A +VN+S K +SD E D + T
Sbjct: 271 YAYNSEASTSRPRIGTAVVENTLKIWNENPSYSAGEIVNFSYPAKEVLSDSEKDLIN-TF 329
Query: 225 RTLLAIPGYEQKVE 266
+T + +E+ E
Sbjct: 330 KTKFELSTHERTRE 343
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -3
Query: 361 TSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSMSEIA 182
T+ ST ++TITS+ EP + K +++ + ++ P+ + L TS ++I+
Sbjct: 359 TTSLETSTTDISTITSTEEPISTTVKTHEQSSTSGMEFSTMSTTYEPITTTLETSTTDIS 418
Query: 181 LFNVQDQ 161
+ ++
Sbjct: 419 IITSTEE 425
>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
protein R11A8.6 protein.
Length = 1141
Score = 29.5 bits (63), Expect = 1.5
Identities = 24/105 (22%), Positives = 49/105 (46%)
Frame = +3
Query: 69 TMDPSMCRAVNEAFIRLHDAGDIYRANRLVNWSCTLKSAISDIEVDKLELTGRTLLAIPG 248
T+ P +V AF LH G +Y+ +++ +S + +S+ E +
Sbjct: 152 TLYPWFMESVWWAFSELHKKGLVYKGVKVMPFSTACSTPLSNFEAGQ------------N 199
Query: 249 YEQKVEFGVLVHFAYKVEGSDEEVIVATTRVETMLGDVAVAVHPN 383
Y+ V+ V V F ++ + +++ TT T+ ++A+ VHP+
Sbjct: 200 YKDVVDPAVFVGFKL-LDCPNRQLVAWTTTPWTLPSNLALVVHPD 243
>U41277-3|AAA82474.1| 154|Caenorhabditis elegans Hypothetical
protein C06E4.4 protein.
Length = 154
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 391 LASLGWTATATSPSMVST--LVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPV 218
L S G +P +V+T + VAT SS + T Y S P++ C Y G ++
Sbjct: 90 LISEGIRVNTVNPGVVATGFMEVATGLSSEQSQTFYDNVGSNPSAIPCGYSGRPEQIAKA 149
Query: 217 NSNLS 203
+ LS
Sbjct: 150 IAFLS 154
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
T+T+T+ S+V+T T+TS++EP+T TSTP +T
Sbjct: 281 TSTSTTTSVVTT---TTVTSTTEPTTS----TSTPTTT 311
>AL132862-28|CAB60545.2| 610|Caenorhabditis elegans Hypothetical
protein Y73F8A.19 protein.
Length = 610
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 371 SHSHI-PKHGFYSSSSHYHLLIRAFNFVRKVNQYSELYLLFI 249
SH H+ P G S YHL +A N + N+ Y+LFI
Sbjct: 397 SHQHVHPLSGAKFSQIIYHLAKQAQNNFNRANEPPSYYVLFI 438
>Z73976-4|CAA98287.2| 965|Caenorhabditis elegans Hypothetical
protein T07C12.8 protein.
Length = 965
Score = 27.5 bits (58), Expect = 6.0
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 388 ASLGWTATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIAN 233
A + ++ T+P+ +T V T T+SSEPST T+T S+ I+N
Sbjct: 412 AKISILSSTTAPT--TTAQVLTTTTSSEPSTTTTPPTTTQTSSSNQTSTISN 461
>U61951-1|AAB03157.2| 530|Caenorhabditis elegans Hypothetical
protein C48A7.2 protein.
Length = 530
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 340 TLVVATITSSSEPSTLYAK*TSTPNSTFCSY 248
T+VV+T S+ E ++ +AK T P+S+ S+
Sbjct: 308 TIVVSTCPSNGESTSSFAKNTIRPSSSLASF 338
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNST 260
T T T+P+ +T T T+ + +T+ T+TP +T
Sbjct: 190 TTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTT 227
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 395 IPGIIRVDSHSHIPKHGFYSSSS 327
IPG+ R+DSH H P FY + S
Sbjct: 2668 IPGVRRIDSHPHAP---FYVTGS 2687
>Z70311-3|CAA94372.1| 546|Caenorhabditis elegans Hypothetical
protein T25B9.4 protein.
Length = 546
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 357 DVAVAVHPNDARYKHLIGKNLIHPICNLKM 446
D+ ++ H DA Y H L+HP +K+
Sbjct: 87 DLKISFHSIDALYNHYRKNELVHPNLRIKL 116
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCS 251
+ T T PS T T T++ +P+T + TST +T S
Sbjct: 598 STTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTS 638
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCS 251
+ T T PS T T T++ +P+T + TST +T S
Sbjct: 598 STTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTS 638
>AF016656-1|AAB66040.1| 332|Caenorhabditis elegans Hypothetical
protein C35A11.3 protein.
Length = 332
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/76 (23%), Positives = 38/76 (50%)
Frame = -3
Query: 373 TATATSPSMVSTLVVATITSSSEPSTLYAK*TSTPNSTFCSYPGIANRVLPVNSNLSTSM 194
T TAT + VST AT SS+ + +++ + + +T C+ P N +L+++
Sbjct: 39 TTTATESTTVSTSTTAT--SSTPTTEIFSSNSPSTETTTCASP-----TTSTNGHLTSTT 91
Query: 193 SEIALFNVQDQLTNRF 146
A ++ ++ N++
Sbjct: 92 DGAATSPIKTEVLNKY 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,570,415
Number of Sequences: 27780
Number of extensions: 224977
Number of successful extensions: 829
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -