Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0083
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    29   0.92 
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    28   1.6  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    27   2.1  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    27   2.8  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    27   3.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.9  
SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratas...    25   8.6  

>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 566  GVEEQKSAELGAET--RALCTSEYSDISPLSGGNVPFSTLEGRPF 694
            GV E  + ++G+ET  R+LC +E   I  L    V F    G+PF
Sbjct: 891  GVFETVNIDMGSETAQRSLCITELPIILQLQIQRVQFDRTTGQPF 935


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 107 RVGSKRASCYKSDGKPQRCIPEFENAAYLVQ 199
           +VG KR  C+++ G    C  EFEN  Y ++
Sbjct: 449 QVGYKRL-CFRTKGNGPMCFVEFENIPYAME 478


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 468 RLDLKVLQFTRRQTKTKFGSHSN-ISVPHVEK 560
           R+D  VL    R TK + GSH N I VP  E+
Sbjct: 183 RIDASVLDVICRDTKDRSGSHVNRIYVPKAEQ 214


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
 Frame = +2

Query: 371 TMKEGIQYPNQVNLTLHLGKAY----DITYVRIVFYSPRPQSFAIYKKTNEDKVWEPF 532
           T+ +    P+QV L  HL K+Y     IT + ++   P      + K    D VW  F
Sbjct: 241 TLSDDSHGPHQVGLNYHLAKSYLDKCGITSLCMIEKGPDGNG-TVVKNVTVDNVWSKF 297


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 154 SKMHTRVRERRLFGSDGGDQHLWRQRSKVILYT 252
           S + TRV+    F   GG QHL+R  S V++ T
Sbjct: 29  STIITRVQSSLSFQQAGGFQHLYRGLSSVLVST 61


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 521 WEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISPLSG-GNVPF 670
           WE F     S  ETY ++  + + +    R LC S  + I P+S  GN+ F
Sbjct: 684 WERF----ISSTETYELDSIRDSLIDCLIRLLCYSSNNAIDPVSAPGNLDF 730


>SPAC27D7.04 |omt2||4-alpha-hydroxytetrahydrobiopterin dehydratase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 520 NFVFVCLLVNCKTLRSRRIKHYPDICNI 437
           NF+     ++C  LR++++ H+P+  N+
Sbjct: 35  NFIEAWGFMSCVALRAQQLNHHPEWTNV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,892
Number of Sequences: 5004
Number of extensions: 70339
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)