Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0083
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    31   1.3  
11_04_0347 + 16628129-16628244,16628343-16628512,16629141-166294...    29   3.9  
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608           29   5.1  

>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 8/203 (3%)
 Frame = +2

Query: 95  YQTPRVGSKRASCYKSDGKPQRCI--PEF--ENAAYLVQMEATNTCGDNGVKLYCIQTSA 262
           Y +P+ G   A+C +        +  PEF  +N  Y    +    C D+GV +  +Q   
Sbjct: 220 YVSPK-GQSFATCQEVSAYLMSLLGYPEFKTDNIEY-GSTQQHGLCADDGVNVLGVQHQI 277

Query: 263 GTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGI-QYP-NQVNLTLHLGKAY 436
           GTS  S     P   +++Y     H +D     Q ET+ + I  Y   Q NLT H   AY
Sbjct: 278 GTSMDSQSNL-PVASATFY----SHSRD-----QDETVADDINSYECQQCNLTFHGQSAY 327

Query: 437 DITYVRIVFYSPRPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRAL 616
               +     S + +      K  E  + +  ++    C +T+  + +    +G+  +  
Sbjct: 328 AHHLITFHKVSSKRRKSNKVSKFGEPVIGKDGKFECPVCNKTFEEQSRYFGHIGSHAKYQ 387

Query: 617 CTSEYSDISPLSG--GNVPFSTL 679
             +  + +   SG  GN  F+ L
Sbjct: 388 GLTPEAFLQTFSGKVGNNSFAGL 410


>11_04_0347 +
           16628129-16628244,16628343-16628512,16629141-16629409,
           16630337-16630475,16630573-16630639,16630721-16630842,
           16630946-16631085
          Length = 340

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 344 DNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDI 442
           + Q +W  E++K   Q PN+ NLT   G  +D+
Sbjct: 107 EEQCYWIRESLKTFPQPPNRTNLTALYGPIFDL 139


>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
          Length = 241

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +2

Query: 434 YDITYVRIVFYSPRPQSFAIYKKTNE----DKV-WEPFQYFSASCR 556
           Y I   +++F  PRPQS       N     D++  EPF + S SC+
Sbjct: 84  YTINSAKVIFLKPRPQSRPFKGSGNVCLTCDRILQEPFHFCSLSCK 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,007,421
Number of Sequences: 37544
Number of extensions: 485270
Number of successful extensions: 1275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)