Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0083
(740 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 194 5e-50
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 6e-30
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0) 86 3e-17
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 78 7e-15
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0) 44 1e-04
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31) 31 1.3
SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32) 30 2.3
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_25926| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.9
SB_6483| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1) 28 9.1
SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7) 28 9.1
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 194 bits (474), Expect = 5e-50
Identities = 96/214 (44%), Positives = 130/214 (60%), Gaps = 4/214 (1%)
Frame = +2
Query: 110 VGSKRASCYKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRSCDY 289
VG + CY S G+ QRC+P+F NAA+ ++ + NTCGD K +C+QT + C+
Sbjct: 34 VGQLQIQCYDSQGRAQRCMPQFGNAAFGKRVISNNTCGDPPKK-FCVQTGVLEVRKECEM 92
Query: 290 CQPG----QFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI 457
C + + +TD+ + N+TWWQSET+ E P V LTL LGK+YD++Y+RI
Sbjct: 93 CNSSDPALEHPALKITDIK-DDTNRTWWQSETLLENPDKP--VTLTLDLGKSYDVSYIRI 149
Query: 458 VFYSPRPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSD 637
F SPRP+S AIYKKT W P+QYFSA+C +TYGV + + ALCT +S
Sbjct: 150 RFRSPRPESMAIYKKTTPSSKWIPYQYFSATCEKTYGVTTNGIVDPRNQQVALCTDAFST 209
Query: 638 ISPLSGGNVPFSTLEGRPFGIYVRQQSRIQDWVT 739
I+PL+GGNV FSTLE RP +Q+WVT
Sbjct: 210 ITPLTGGNVAFSTLEDRPDAYNFDNSPALQEWVT 243
>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 128 bits (308), Expect = 6e-30
Identities = 82/241 (34%), Positives = 117/241 (48%), Gaps = 10/241 (4%)
Frame = +2
Query: 44 IYTYLLSI-LSVAVAQNYYQ-----TPRVGSKRASCYKSDGKPQRCIPEFENAAYLVQME 205
++TYL S L V V YQ G + CY + Q C P F + AY +
Sbjct: 1 MFTYLGSYHLKVGVLLCLYQGCVSILSAYGGQAKDCYNEFNRAQLCQPAFHDLAYNKDVY 60
Query: 206 ATNTCGDNGVKLYCIQTSAGTSTRSCDYCQPGQFSSY----YLTDLHHEQDNQTWWQSET 373
++TCG+ + +C S T +C +C + YLTD+H+E +N T WQ++
Sbjct: 61 VSHTCGEKS-RRFCPPMSVRGRT-ACGFCDERNAKTSHPAKYLTDVHNE-NNVTCWQADP 117
Query: 374 MKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSPRPQSFAIYKKTNEDKVWEPFQYFSASC 553
+Q V L L GK YDITYV + F RP S IYK + K W+ +Q++S+ C
Sbjct: 118 ----VQSRENVTLILSFGKTYDITYVSLQFCGIRPDSMGIYKSMDYGKSWQAYQFYSSRC 173
Query: 554 RETYGVEEQKSAELGAETRALCTSEYSDISPLSGGNVPFSTLEGRPFGIYVRQQSRIQDW 733
+ YG E ALCT + + PL GG + FSTLEGRP + + +Q+W
Sbjct: 174 EKMYGRVTNGEISPENEQVALCTDGHL-LRPLYGGRIAFSTLEGRPSASKMDYSAVMQEW 232
Query: 734 V 736
V
Sbjct: 233 V 233
>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1101
Score = 85.8 bits (203), Expect = 3e-17
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 11/201 (5%)
Frame = +2
Query: 110 VGSKRASCYKSD--GKPQRCIPEFENAAYLVQ--MEATNTCGDNGVKLYCIQTSAGTSTR 277
V + C++++ + C+PE AA + + +T+TCG + YC +
Sbjct: 8 VSKVNSECFENEKYDDVETCVPEPRFAAKMKHRAVSSTSTCGSPPSE-YC-RVKPLNGCF 65
Query: 278 SCDYCQPGQFSSY-YLTDLHHEQDNQTWWQSETMKEGIQY-PN---QVNLTLHLGKAYDI 442
C+ P + Y+ D D T+WQSET + Q P +VN+++ K YDI
Sbjct: 66 KCNASSPTERHPIEYIADKSPGSD-ATFWQSETWWDWYQKNPRDDLKVNVSISFNKTYDI 124
Query: 443 T-YVRIVFYSPRPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAE-LGAETRAL 616
T ++ F SPRP + K ++ + W+P QY+S +CR+ +G+E E + A
Sbjct: 125 TGHIMFTFESPRPSKAILEKSFDKGQTWDPLQYYSFNCRKDFGMENTDPTENRFGDFSAK 184
Query: 617 CTSEYSDISPLSGGNVPFSTL 679
CT +YS SP G V F L
Sbjct: 185 CTEKYSSSSPQQNGKVTFDFL 205
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 78.2 bits (184), Expect = 7e-15
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Frame = +2
Query: 128 SCYKSD-GKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRSCDYCQPGQ 304
+CY+ D G+ C+P + + +NTCG K YC C YC
Sbjct: 31 TCYERDTGRATPCMPFTSFMSLTRNVTTSNTCGTTRAK-YCELPGP----EPCYYCDANS 85
Query: 305 FSSYYLTDLHHEQDNQ----------TWWQSETMKE-------GIQYPNQVNLTLHLGKA 433
+S + + DN+ TWWQS+T E I+ P +VN+TL GK
Sbjct: 86 SNSNEQHPVTNLVDNELVLPFYAQKYTWWQSQTWWETNQLGLSSIENPPKVNITLSFGKR 145
Query: 434 YDIT-YVRIVFYSPRPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETR 610
Y ++ +++ FYS RP++ K + WE ++ C Y +E Q + + +
Sbjct: 146 YQLSGHIKATFYSKRPKAMCFDKSNDFGHTWETLLCYAWRCDRFYNMEPQSNPDPANPFK 205
Query: 611 ALCTSEYSDISPLSGGNVPF 670
CT EYS P G V F
Sbjct: 206 LYCTEEYSGHEPRKLGIVEF 225
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 66.1 bits (154), Expect = 3e-11
Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 13/227 (5%)
Frame = +2
Query: 47 YTYLLSILSVAVAQNYYQTPRVGSKRASCYKSDGKPQR-CIPEFENAAYLVQME----AT 211
+T + +LSV + Q Y + G + S +R C P LV E A+
Sbjct: 1068 FTPVRLVLSVRILQQYRCSGVEGVPSSDAQASAQCAKRSCYPA--TGDLLVGRENKIYAS 1125
Query: 212 NTCGDNGVKLYCIQTSAGT--STRSCD---YCQPGQFSSY--YLTDLHHEQDNQTWWQSE 370
+TCG G + YC+ ++ CD Y QFS Y+ + WWQSE
Sbjct: 1126 STCGLRGPEEYCVVSNLQDYGDCHICDSRPYQTNPQFSHVPKYMLSSFDGRKKDEWWQSE 1185
Query: 371 TMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSPRPQSFAIYKKTNEDKVWEPFQYFSAS 550
+E + L L L + T++ + F + RP I + + K W+ ++YFSA
Sbjct: 1186 NGRENVY------LQLDLESEFHFTHLIMRFRTFRPAGMVIERSWDYGKKWQIYRYFSAD 1239
Query: 551 CRETY-GVEEQKSAELGAETRALCTSEYSDISPLSGGNVPFSTLEGR 688
C + + G+ + + ++ +CT++YS + P + G V F L+ +
Sbjct: 1240 CDKIFPGIPKGEPKDI---DDVICTNKYSTVEPSTNGEVIFRALKSQ 1283
>SB_32355| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1358
Score = 44.0 bits (99), Expect = 1e-04
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 12/174 (6%)
Frame = +2
Query: 179 NAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRS-----CDYCQPGQFSSYYLTDLHHEQ 343
N A++ Q EA TCG + Y + S R+ CD P S+ ++L +
Sbjct: 480 NVAFMKQAEAQITCGLRAREKYFAVSQMSQSPRNRVESTCDAYDPEL--SHNASNLV-DN 536
Query: 344 DNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSP-RPQSFAIYKKTNEDKV 520
+ TWWQS T G + LT K + + ++I F RP+ A+ K N +
Sbjct: 537 NESTWWQS-TASVGTANIT-IRLTGPAFKQFYVDTIQIKFGEYYRPRQMALKKSINNGQS 594
Query: 521 WEPFQYF------SASCRETYGVEEQKSAELGAETRALCTSEYSDISPLSGGNV 664
++ + YF C+E + +E + E LCT Y D++ S G V
Sbjct: 595 FDDWHYFVSYPDPDKQCKEKF--DETLQTQPSKENDVLCTG-YPDVNSQSIGQV 645
>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
Length = 541
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 533 QYFSAS---CRETYGVEEQKSAELGAETRALCTSEYSDISPLSGG 658
QYF+ S C++ +G+ S + + +CT+EYS+I P G
Sbjct: 123 QYFATSPSECQQYFGISHLLS--ITRDDSVICTTEYSNIPPFENG 165
>SB_6595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 396 GYWIPSFIVSDCHH 355
GYW+P ++++CHH
Sbjct: 626 GYWVPDALITNCHH 639
>SB_4021| Best HMM Match : FYVE (HMM E-Value=2.3e-32)
Length = 255
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 396 GYWIPSFIVSDCHH 355
GYW+P ++++CHH
Sbjct: 188 GYWVPDALITNCHH 201
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 512 DKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISPLSGGNVPFS---TLE 682
D +++ QYF++ C+ ++G+E + ++ +Y P S + F ++
Sbjct: 225 DLLYQELQYFASDCQSSFGMENNGNL---VNPDSINCIQYQRPLPYSSATIAFKLERSIP 281
Query: 683 GRPFG 697
RPFG
Sbjct: 282 ARPFG 286
>SB_25926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 35 RPLIYTYLLSILSVAVAQNYYQTPRVGSKRASCYKS 142
RPL YTYL +++ + +N Y+ + R +C++S
Sbjct: 173 RPLPYTYLFTVVGQLLHRNRYEL--ISFTRLTCFRS 206
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/73 (24%), Positives = 33/73 (45%)
Frame = +2
Query: 164 IPEFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQ 343
+P+ AY++Q + TN C NG C Q S + R ++ + + + Y+ Q
Sbjct: 239 VPQQYYEAYILQRKVTNPCVVNGFGTLCTQYSYMNAIRP-EFPKV-ELETGYIITRQGRQ 296
Query: 344 DNQTWWQSETMKE 382
Q + E +K+
Sbjct: 297 QTQVFNDKEVLKQ 309
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 421 FGQSV*YYICPDSVLFASTSKFCNLQEDK--RRQSLGAIP-IFQCL 549
+G YY CP L ++ +FC++Q + RQ + +P + +CL
Sbjct: 243 YGGRALYYSCPQGKLIGTSHRFCDVQTGQWSGRQPICKVPSVPKCL 288
>SB_6483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 528 HSNISVPHVEKLTELKSRKVLN*VRKLEPFAPANIQIYLHYPE 656
H +IS H +E + ++ +RKL PF P + + + H+ +
Sbjct: 121 HLHISSRHSTVRSEADEQGMVRDLRKLRPFLPVHARAHSHFKD 163
>SB_42932| Best HMM Match : zf-UBR1 (HMM E-Value=7.1)
Length = 271
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +2
Query: 236 KLYCIQTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT 415
K C A R C C + S + D +E + +++Q ET +GI QVN
Sbjct: 38 KTVCSTNDAKCMERDCSKCDV-EGSVNDMFDECNEDQSVSYYQWETSDDGIVRKVQVN-- 94
Query: 416 LHLGKAYDITYVRI 457
+LG+A D V++
Sbjct: 95 CNLGEAKDDLIVQL 108
>SB_41307| Best HMM Match : zf-UBR1 (HMM E-Value=6.7)
Length = 243
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +2
Query: 236 KLYCIQTSAGTSTRSCDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT 415
K C A R C C + S + D +E + +++Q ET +GI QVN
Sbjct: 119 KTVCSTNDAKCMERDCSKCDV-EGSVNDIFDECNEDQSVSYYQWETSDDGIVRKVQVN-- 175
Query: 416 LHLGKAYDITYVRI 457
+LG+A D V++
Sbjct: 176 CNLGEAKDDLIVQL 189
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 119 KRASC-YKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGV-KLYC 247
K+ +C KS GK + P EN+ + ++ + TCG V ++YC
Sbjct: 426 KKCACDKKSPGKGTQDKPRTENSTSVTKLWTSETCGSITVGEIYC 470
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,937,247
Number of Sequences: 59808
Number of extensions: 548884
Number of successful extensions: 1428
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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