Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0083
(740 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 221 6e-58
U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated p... 129 2e-30
M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein. 129 2e-30
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 87 1e-17
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 87 1e-17
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 87 1e-17
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 73 2e-13
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 71 7e-13
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 71 7e-13
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 71 7e-13
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 71 7e-13
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 34 0.12
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 30 1.5
U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical pr... 30 1.5
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ... 30 1.5
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 30 1.5
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF098996-3|AAC68707.2| 349|Caenorhabditis elegans Serpentine re... 29 4.6
Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical pr... 28 8.0
AF036702-8|AAR85905.1| 377|Caenorhabditis elegans Hypothetical ... 28 8.0
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 221 bits (539), Expect = 6e-58
Identities = 107/215 (49%), Positives = 144/215 (66%), Gaps = 6/215 (2%)
Frame = +2
Query: 113 GSKRASCY-KSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRS-CD 286
G+ CY ++ +PQRC+P+F NAA+ ++++ TNTCG +C+Q S T RS C+
Sbjct: 19 GADGNPCYDRATRQPQRCVPDFVNAAFNLEVQVTNTCGTKRPTKFCVQ-SGHTGQRSVCE 77
Query: 287 YCQPGQ--FS--SYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVR 454
C FS + YLTD + +N+TWWQS+TM+EG QYP NLTL LGK++DITYVR
Sbjct: 78 TCDDRHEGFSHPAKYLTDFN-VGNNETWWQSDTMQEGQQYPTTTNLTLVLGKSFDITYVR 136
Query: 455 IVFYSPRPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYS 634
+ F SPRP+SF IYKKT+ D WEP+Q++S SCR TYG+ ++ G E A CT E+S
Sbjct: 137 LKFISPRPESFTIYKKTHTDSEWEPWQFYSGSCRATYGLSDRAPILPGNEATAQCTKEFS 196
Query: 635 DISPLSGGNVPFSTLEGRPFGIYVRQQSRIQDWVT 739
DISP++GGN+ FSTLEGRP + +Q WVT
Sbjct: 197 DISPITGGNIAFSTLEGRPSAHAFEESEVLQKWVT 231
>U39745-7|AAA80449.1| 612|Caenorhabditis elegans Uncoordinated
protein 6 protein.
Length = 612
Score = 129 bits (311), Expect = 2e-30
Identities = 78/209 (37%), Positives = 102/209 (48%), Gaps = 6/209 (2%)
Frame = +2
Query: 131 CYKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSA--GTSTRSCDYCQP-G 301
C+ G+P RC+PEF NAA+ + A++TCG N YC G CD C
Sbjct: 37 CHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYCTVKEGPDGIIREQCDTCDARN 96
Query: 302 QFSSY---YLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSP 472
F S+ LTDL+ N T W S P V+LTL LGK +++TYV + F S
Sbjct: 97 HFQSHPASLLTDLN-SIGNMTCWVSTPSLS----PQNVSLTLSLGKKFELTYVSMHFCSR 151
Query: 473 RPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISPLS 652
P S A+YK + K W PFQ++S+ CR +G + S E A+CT+ S I
Sbjct: 152 LPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTA--SHIMGPG 209
Query: 653 GGNVPFSTLEGRPFGIYVRQQSRIQDWVT 739
G V F LE RP +QDWVT
Sbjct: 210 GNRVAFPFLENRPSAQNFENSPVLQDWVT 238
>M80241-1|AAA28157.1| 612|Caenorhabditis elegans unc-6 protein.
Length = 612
Score = 129 bits (311), Expect = 2e-30
Identities = 78/209 (37%), Positives = 102/209 (48%), Gaps = 6/209 (2%)
Frame = +2
Query: 131 CYKSDGKPQRCIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSA--GTSTRSCDYCQP-G 301
C+ G+P RC+PEF NAA+ + A++TCG N YC G CD C
Sbjct: 37 CHDHTGRPVRCVPEFINAAFGKPVIASDTCGTNRPDKYCTVKEGPDGIIREQCDTCDARN 96
Query: 302 QFSSY---YLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSP 472
F S+ LTDL+ N T W S P V+LTL LGK +++TYV + F S
Sbjct: 97 HFQSHPASLLTDLN-SIGNMTCWVSTPSLS----PQNVSLTLSLGKKFELTYVSMHFCSR 151
Query: 473 RPQSFAIYKKTNEDKVWEPFQYFSASCRETYGVEEQKSAELGAETRALCTSEYSDISPLS 652
P S A+YK + K W PFQ++S+ CR +G + S E A+CT+ S I
Sbjct: 152 LPDSMALYKSADFGKTWTPFQFYSSECRRIFGRDPDVSITKSNEQEAVCTA--SHIMGPG 209
Query: 653 GGNVPFSTLEGRPFGIYVRQQSRIQDWVT 739
G V F LE RP +QDWVT
Sbjct: 210 GNRVAFPFLENRPSAQNFENSPVLQDWVT 238
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 87.0 bits (206), Expect = 1e-17
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Frame = +2
Query: 167 PEFENAAYLVQMEATNTCGDNGVKLYC-------IQTSAGTSTRSCDYCQPGQFSSYYLT 325
P N A + AT+TCG + YC ++ + T + CD C +
Sbjct: 50 PNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQCDICDANNVHKRHPI 109
Query: 326 DLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVF-YSPRPQSFAIYKK 502
+ + + WWQS ++ G+++ +VN+T+ L + Y + Y+ + SPRP ++ + +K
Sbjct: 110 E-YAIDGTRRWWQSPSLANGLRF-EKVNITIDLRQEYQVAYIILKMGNSPRPGTWVL-EK 166
Query: 503 TNEDKVWEPFQYFS---ASCRETYGVEEQKSA-ELGAETRALCTSEYSDISPLSGGNVPF 670
+ + + +EP+QY++ A C +G+ E CTSEYS I+PL G +
Sbjct: 167 SLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITPLENGEIHT 226
Query: 671 STLEGRP 691
S + GRP
Sbjct: 227 SLVNGRP 233
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 87.0 bits (206), Expect = 1e-17
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Frame = +2
Query: 167 PEFENAAYLVQMEATNTCGDNGVKLYC-------IQTSAGTSTRSCDYCQPGQFSSYYLT 325
P N A + AT+TCG + YC ++ + T + CD C +
Sbjct: 50 PNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQCDICDANNVHKRHPI 109
Query: 326 DLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVF-YSPRPQSFAIYKK 502
+ + + WWQS ++ G+++ +VN+T+ L + Y + Y+ + SPRP ++ + +K
Sbjct: 110 E-YAIDGTRRWWQSPSLANGLRF-EKVNITIDLRQEYQVAYIILKMGNSPRPGTWVL-EK 166
Query: 503 TNEDKVWEPFQYFS---ASCRETYGVEEQKSA-ELGAETRALCTSEYSDISPLSGGNVPF 670
+ + + +EP+QY++ A C +G+ E CTSEYS I+PL G +
Sbjct: 167 SLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITPLENGEIHT 226
Query: 671 STLEGRP 691
S + GRP
Sbjct: 227 SLVNGRP 233
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 87.0 bits (206), Expect = 1e-17
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Frame = +2
Query: 167 PEFENAAYLVQMEATNTCGDNGVKLYC-------IQTSAGTSTRSCDYCQPGQFSSYYLT 325
P N A + AT+TCG + YC ++ + T + CD C +
Sbjct: 50 PNIFNLATNSLITATDTCGQYTAEEYCKLVEHVLLRKTTNTQSPQCDICDANNVHKRHPI 109
Query: 326 DLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVF-YSPRPQSFAIYKK 502
+ + + WWQS ++ G+++ +VN+T+ L + Y + Y+ + SPRP ++ + +K
Sbjct: 110 E-YAIDGTRRWWQSPSLANGLRF-EKVNITIDLRQEYQVAYIILKMGNSPRPGTWVL-EK 166
Query: 503 TNEDKVWEPFQYFS---ASCRETYGVEEQKSA-ELGAETRALCTSEYSDISPLSGGNVPF 670
+ + + +EP+QY++ A C +G+ E CTSEYS I+PL G +
Sbjct: 167 SLDGEYYEPWQYYAMQDAECMRQFGIPATTGVPRFQKEDEVHCTSEYSKITPLENGEIHT 226
Query: 671 STLEGRP 691
S + GRP
Sbjct: 227 SLVNGRP 233
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 72.9 bits (171), Expect = 2e-13
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Frame = +2
Query: 197 QMEATNTCGDNGVKLYCIQTSAGTSTRSCDYC----------QPGQFSSYYLTDLHHEQD 346
Q++AT+TCG G + +CI + T+ C YC +P + S + D
Sbjct: 51 QLKATSTCGSQGRQRFCIVSHLEEQTK-CFYCDSRTEWKPQREPYRLSHRIENVVTEVMD 109
Query: 347 --NQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRIVFYSPRPQSFAIYKKTNEDKV 520
N+ W+QSE G Q V+++ L + T++ + F S RP + I + + K
Sbjct: 110 DKNRNWYQSEN---GAQ---NVSISFDLEAEFHFTHLIMTFKSFRPAAMIIERSADFGKT 163
Query: 521 WEPFQYFSASCRETY-GVEEQKSAELGAETRALCTSEYSDISPLSGGNVPFSTL 679
W+ ++YF+ C ++ G+ E + T +CTS+YSD++P +GG + + +
Sbjct: 164 WQVYRYFAYDCDSSFPGIPEGPPKK---HTDVICTSQYSDVAPSTGGEIVYKVI 214
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Frame = +2
Query: 281 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 457
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 458 VFYSPRPQSFAIYKKTNEDKVWEPFQYF---SASCRETYGVEEQKSAELGAETRALCTSE 628
+ SPRP S+ + + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 629 YSDISPLSGGNVPFSTLEGRP 691
+ + PL + LE RP
Sbjct: 216 MASLQPLENAEMVIRILEHRP 236
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Frame = +2
Query: 281 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 457
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 458 VFYSPRPQSFAIYKKTNEDKVWEPFQYF---SASCRETYGVEEQKSAELGAETRALCTSE 628
+ SPRP S+ + + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 629 YSDISPLSGGNVPFSTLEGRP 691
+ + PL + LE RP
Sbjct: 216 MASLQPLENAEMVIRILEHRP 236
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Frame = +2
Query: 281 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 457
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 458 VFYSPRPQSFAIYKKTNEDKVWEPFQYF---SASCRETYGVEEQKSAELGAETRALCTSE 628
+ SPRP S+ + + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 629 YSDISPLSGGNVPFSTLEGRP 691
+ + PL + LE RP
Sbjct: 216 MASLQPLENAEMVIRILEHRP 236
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 71.3 bits (167), Expect = 7e-13
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 4/141 (2%)
Frame = +2
Query: 281 CDYCQPGQFSSYYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLTLHLGKAYDITYVRI- 457
C +C G +S+ ++ N +WW S + G+Q+ N+VN+T+ L + + + YV I
Sbjct: 101 CGHCNAGNENSHPAANM--VDGNNSWWMSPPLSRGLQH-NEVNITIDLEQEFHVAYVWIQ 157
Query: 458 VFYSPRPQSFAIYKKTNEDKVWEPFQYF---SASCRETYGVEEQKSAELGAETRALCTSE 628
+ SPRP S+ + + T+ K ++P+ F +A C +G+E + + + C ++
Sbjct: 158 MANSPRPGSWVLERSTDHGKTYQPWFNFAENAAECMRRFGME--SLSPISEDDSVTCRTD 215
Query: 629 YSDISPLSGGNVPFSTLEGRP 691
+ + PL + LE RP
Sbjct: 216 MASLQPLENAEMVIRILEHRP 236
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Frame = +2
Query: 143 DGKPQRCIPEFENAAYLVQMEATNTCGD-NGVKLYCIQ-TSAGTSTRSCDYCQPGQFSSY 316
DG I E E E C D +GV +C + SCDY G + Y
Sbjct: 97 DGLLTEIIEESEEEMQKALNEKKTLCQDKDGVNGFCPDHINPEPKAVSCDYVCYGYCTKY 156
Query: 317 YLTDLHHEQDNQTWWQSETMKE 382
LT N WW+++T+ E
Sbjct: 157 DLTCYLTPTSNTAWWKNQTIGE 178
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 314 YYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT-LHLGKAYDITYVRIVFYSPRPQSFA 490
+ LT +H E+D+ T W T +E + N LT G A + YV YS S
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS-YSSSEE 1457
Query: 491 IYKKTNEDKVWE 526
+ KK K+WE
Sbjct: 1458 LRKK---KKIWE 1466
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 314 YYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT-LHLGKAYDITYVRIVFYSPRPQSFA 490
+ LT +H E+D+ T W T +E + N LT G A + YV YS S
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS-YSSSEE 1457
Query: 491 IYKKTNEDKVWE 526
+ KK K+WE
Sbjct: 1458 LRKK---KKIWE 1466
>U10414-9|AAA19072.1| 712|Caenorhabditis elegans Hypothetical
protein F42A10.1 protein.
Length = 712
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 368 PTATMSGCPARDEGLLSNS*KTVLVDSSHRTL*TSQLMSVYSITL 234
P+AT S P RD G + K + ++S ++ T QL+S +T+
Sbjct: 157 PSATASQAPIRDSGARGANSKDIKLESVDISIGTKQLLSCADVTM 201
>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
protein Y46B2A.3 protein.
Length = 1145
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 155 QRCIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTR 277
QRC + Y +Q+E NT G N + ++C S S R
Sbjct: 88 QRCPNKLRVIGYSLQIEPNNTAGANNIAVFCGDGSEPRSKR 128
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 314 YYLTDLHHEQDNQTWWQSETMKEGIQYPNQVNLT-LHLGKAYDITYVRIVFYSPRPQSFA 490
+ LT +H E+D+ T W T +E + N LT G A + YV YS S
Sbjct: 1399 FILTVIHMERDSVTQWILSTFEEALTNTNHRRLTNSDRGPASFVFYVFDFIYS-YSSSEE 1457
Query: 491 IYKKTNEDKVWE 526
+ KK K+WE
Sbjct: 1458 LRKK---KKIWE 1466
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
E01G6.1 protein.
Length = 1391
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 422 NVGSNSLD*GTGFLPSLSPTATMSGCPARDEGLL 321
N G+N+ + G G +P A+ SGCP L+
Sbjct: 1097 NFGNNNFNMGGGAVPGFGNQASQSGCPLGSRPLI 1130
>AF098996-3|AAC68707.2| 349|Caenorhabditis elegans Serpentine
receptor, class w protein79 protein.
Length = 349
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 3/32 (9%)
Frame = +2
Query: 11 STRSDKMARP---LIYTYLLSILSVAVAQNYY 97
S R+DK+ARP + T+++S++S A++ YY
Sbjct: 129 SGRADKLARPSSGYLITFIISVISAALSGWYY 160
>Z82055-7|CAB04849.1| 387|Caenorhabditis elegans Hypothetical
protein T26H2.8 protein.
Length = 387
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 10 LHALRQNGAAAHLHIFAQYLE-RSRGSELL 96
+HAL QN A H+F + LE S+ ELL
Sbjct: 190 IHALIQNAIAREFHVFNEELEGASKNKELL 219
>Z77655-7|CAB01133.2| 221|Caenorhabditis elegans Hypothetical
protein C56A3.4 protein.
Length = 221
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -2
Query: 253 LYTV*LY--SVVSTGVGRL--HLNQIGGVLELWYASLRFSIGFITRGSFRADPRRLVIIL 86
LYTV Y S+V T VG + + + ++++ ++F +GFI + RA P R +
Sbjct: 86 LYTVVPYGVSIVYTVVGFIFPQVRIVTRIIDVLLHPIKFILGFIEKVDNRAAPIRRTVEA 145
Query: 85 SHG 77
HG
Sbjct: 146 IHG 148
>AF036702-8|AAR85905.1| 377|Caenorhabditis elegans Hypothetical
protein F33D4.5 protein.
Length = 377
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 465 IRLDLKVLQFTRRQTKTKFGSHSNISVPH 551
IRL L++ T RQTK GS + VPH
Sbjct: 137 IRLRLELNMTTERQTKMVTGSDEIVPVPH 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,927
Number of Sequences: 27780
Number of extensions: 401250
Number of successful extensions: 1117
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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