Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0083
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa...    30   1.4  
At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    30   1.9  
At5g64560.2 68418.m08114 magnesium transporter CorA-like family ...    29   2.4  
At2g28605.1 68415.m03477 expressed protein                             29   2.4  
At1g65920.1 68414.m07480 regulator of chromosome condensation (R...    29   4.3  
At3g09090.1 68416.m01069 defective in exine formation protein (D...    28   5.7  
At1g09240.1 68414.m01031 nicotianamine synthase, putative simila...    28   5.7  

>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 161 CIPEFENAAYLVQMEATNTCGDNGVKLYCIQTSAGTSTRSCDYCQPGQFSS 313
           C+ EF++   L  +E       +G  +YCIQ    +S  SC  C+   FSS
Sbjct: 105 CLSEFQDGDTLRVLERCK----HGFHVYCIQKWLSSSHSSCPTCRTNIFSS 151


>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 445 ICPDSVLFASTSKFCNLQEDKRRQSLGAIPIFQ 543
           + P +VLF     F +++  KR++++GAIP+F+
Sbjct: 261 VVPITVLFLLFVAFFSVRRAKRKKTIGAIPLFK 293


>At5g64560.2 68418.m08114 magnesium transporter CorA-like family
           protein (MRS2-2) weak similarity to SP|Q01926 RNA
           splicing protein MRS2, mitochondrial precursor
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01544: CorA-like Mg2+ transporter protein
          Length = 378

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 590 ELGAETRALCTSEYSDISPLSGGNVPFSTLEGRPFGI-YVRQQSRIQ 727
           EL   +  +C S YS ++ + G N+P++  +G  +   YVR Q+ I+
Sbjct: 328 ELVLSSGTVCLSMYSLVAGIFGMNIPYTWNDGHGYMFKYVRNQNSIR 374


>At2g28605.1 68415.m03477 expressed protein
          Length = 232

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -3

Query: 618 QRALVSAPNSALFCSSTP*VSRHEALKYWNGSQTLSSFVFL*IAK 484
           Q  L SAP   LF SS P  S H+  K++  +Q  SS V + ++K
Sbjct: 4   QSFLGSAPKLCLFSSSLPPFSHHKIHKFFCFAQNPSSTVSINLSK 48


>At1g65920.1 68414.m07480 regulator of chromosome condensation
           (RCC1) family protein / zinc finger protein-related
           contains Pfam profiles: regulator of chromosome
           condensation (RCC1), PF01363 FYVE zinc finger
          Length = 1006

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 78  PWLRIITKRRGSALNEPLVINPMENLKDAYQSSRTPPIW 194
           P ++++T+R    L E    N M+NL  A +SS   P W
Sbjct: 716 PRMQMVTRRVSEDLTEKQSENEMQNLPQANRSSDGQPRW 754


>At3g09090.1 68416.m01069 defective in exine formation protein
           (DEX1) identical to defective in exine formation
           [Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
           Pfam domain PF01839: FG-GAP repeat
          Length = 896

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 609 LVSAPNSALFCSSTP*VSRHEALKYWNGS 523
           +VS  N  +FC STP  S H  LK W  S
Sbjct: 709 IVSTMNGNVFCFSTP--SPHHPLKAWRSS 735


>At1g09240.1 68414.m01031 nicotianamine synthase, putative similar
           to nicotianamine synthase [Lycopersicon
           esculentum][GI:4753801], nicotianamine synthase 2
           [Hordeum vulgare][GI:4894912]
          Length = 320

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -1

Query: 734 PSPVFGTAVERICRKVVPPASR---TARCLRIMEIYLNIRWCKGL*FPHLIQHFSALQLR 564
           PS       +++    +PP      T  C R+ EI LN+    GL   HL  HFS++ L 
Sbjct: 27  PSEDVNILFKQLVSTCIPPNPNIDVTKMCDRVQEIRLNLIKICGLAEGHLENHFSSI-LT 85

Query: 563 KFLD--MRH*NI 534
            + D  + H NI
Sbjct: 86  SYQDNPLHHLNI 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,280,726
Number of Sequences: 28952
Number of extensions: 379004
Number of successful extensions: 1078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)