Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0082
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   2.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   2.9  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   2.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   6.6  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   6.6  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    25   6.6  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    24   8.7  

>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -2

Query: 144 IQELNQQAASKITTIALELEVNLD 73
           ++E+N+ A+ K+T++ LEL ++ D
Sbjct: 587 VREINRDASGKVTSLKLELHLDGD 610


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 148 ATCAAGSERGQQC 186
           ATCAA S RG+QC
Sbjct: 205 ATCAAWSRRGKQC 217


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -3

Query: 242 AGHGLASESSVSIATELVSHCCPRSLPAAHVARYKSSTSKPP 117
           A   +ASESS+S  T  +    P + P       KSSTSKPP
Sbjct: 428 AESAVASESSLSEGTLALKAPAPENKPE------KSSTSKPP 463


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/33 (51%), Positives = 18/33 (54%)
 Frame = +2

Query: 47  PRRLLAFTKSRLTSSSSAIVVIFEAACWLSSCI 145
           P  LLA    R T SSSAI +I E A  L S I
Sbjct: 328 PGILLALLSLRTTLSSSAIQLIKEMAIILKSNI 360


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 248 GDAGHGLASESSV-SIATELVSHCCPRSLPAAHVARYKSSTS 126
           G   H +A  SS+   +T+LVS    +S+P + +  Y + +S
Sbjct: 429 GGVAHNMALASSLMGASTKLVSCVGTKSVPTSSIKEYLTKSS 470


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 176 PRSLPAAHVARYKSSTSKPPQRSP 105
           PR++P   VA Y+S    PP+  P
Sbjct: 520 PRTIPLNGVAPYESELRPPPKWKP 543


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 155 VPQEVSEDNSARLVLLRYSQKTHLLDRDQRRRTMET 262
           +P       S R +LLR+ QK H   + +RRR   T
Sbjct: 106 LPTGCGRQFSRRDLLLRHQQKIHRNPQPRRRRRSTT 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,882
Number of Sequences: 5004
Number of extensions: 17337
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)