Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0082
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0259 + 15937549-15938307,15938393-15938767 31 0.52
04_04_1591 + 34647817-34648416 29 1.6
11_04_0152 + 14153539-14154060 29 2.1
03_05_0534 + 25343973-25344267,25344510-25344979 29 2.1
10_02_0135 + 5674786-5675040,5675179-5675490,5676505-5677010,567... 28 3.7
10_01_0334 - 3680612-3681266,3682253-3682374 28 3.7
03_05_0740 + 27273697-27273908,27273940-27274387 28 3.7
03_04_0249 - 19341182-19342237,19342284-19342505 28 3.7
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 28 3.7
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506... 28 3.7
01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780... 27 6.4
11_06_0240 + 21640163-21640172,21641062-21641384,21641395-21641565 27 8.5
08_01_1034 - 10482670-10483400,10483442-10483964 27 8.5
03_05_0065 + 20450814-20452748 27 8.5
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 8.5
01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516 27 8.5
>03_03_0259 + 15937549-15938307,15938393-15938767
Length = 377
Score = 30.7 bits (66), Expect = 0.52
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 248 GDAGHGLASESSVSIATELVSHCCPRSLPAAHVARYKSSTSKPP 117
G AG L +L + C PR+ P++H SS PP
Sbjct: 293 GAAGQNLKKHKQYKPRLQLGAPCAPRTAPSSHPGASSSSAPPPP 336
>04_04_1591 + 34647817-34648416
Length = 199
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 382 GADGLPVQRRPANARTRSVARCLARRREDKEGSSG 278
GA +PV A+T++ R +A + +DK G G
Sbjct: 105 GAAAMPVALERQEAKTKTAGRLIATQGDDKSGGGG 139
>11_04_0152 + 14153539-14154060
Length = 173
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 406 RGVDVPVGGADGLPVQRRPANARTRSVARCLARRREDKEGSSGEEVG 266
RG D GG DG+ QR A+A + C R RE ++G
Sbjct: 115 RGGDCDAGGGDGMASQR--ADAAVGAAGGCWRREREGAATGGATDLG 159
>03_05_0534 + 25343973-25344267,25344510-25344979
Length = 254
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -1
Query: 403 GVDVPVGGADG----LPVQRRPANARTRSVARCLARRREDKEGSSGEEVGP 263
GVD P D + ++ A R + RCLARRR+ E + ++ P
Sbjct: 40 GVDAPQSSVDATEEHVHIEDMRQRAAARCLIRCLARRRDSGERAQPQQPKP 90
>10_02_0135 +
5674786-5675040,5675179-5675490,5676505-5677010,
5677057-5677103,5677457-5677918,5678071-5678294
Length = 601
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 178 QQCETSSVAILTEDSLARP*PASPHHGDRDL 270
QQ E + LTE +L P +P HG R L
Sbjct: 235 QQAEILDIEDLTEHTLQEPSEQTPRHGKRSL 265
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.9 bits (59), Expect = 3.7
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 415 LAERGVDVPVGGADGLPVQRRPANARTRSVARCLARRREDKEGSSGEE 272
L E V + G + +RR A R R A AR RED E +SGE+
Sbjct: 29 LLESWQSVKIEGQEKATQRRRAARMRQRQQA---ARGREDGEKASGED 73
>03_05_0740 + 27273697-27273908,27273940-27274387
Length = 219
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 418 HLAERGVDVPVGGADGLPVQRRPANARTRSVARCL 314
HL V + GADG V R P A+TR + R L
Sbjct: 25 HLVVEKYGVSMKGADGDVVHRAPGRAQTRLLLRWL 59
>03_04_0249 - 19341182-19342237,19342284-19342505
Length = 425
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 248 GDAGHGLASESSVSIATELVSHCCPRSLPAAHVARYKSSTSKPP 117
G AG L +L + PR+LP++H SS PP
Sbjct: 304 GAAGQNLKKNKQYKPRLQLGAPRAPRTLPSSHPGASSSSAPPPP 347
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 242 AGHGLASESSVSIATELVSHCCPRSL-PAAHVARYKSSTSKPPQRS 108
AGHGLA S+ ++ + R+L PAAH R + + P R+
Sbjct: 9 AGHGLALRRSLHLSKPSCATFSARALPPAAHCCRTVVAAAAPSSRT 54
>01_01_0663 -
5059881-5060119,5060682-5060898,5061008-5061838,
5063560-5064120
Length = 615
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 415 LAERGVDVPVGGADG--LPVQRRPANARTRSVARCLARRREDKEGSSGEEVGPGL 257
LA+ + VP GG G L V R +AR+ + ARR G GE+ G L
Sbjct: 54 LADARIAVPGGGGGGGDLLVHRCVLSARSPFLRGVFARRAAAAAGGGGEDGGERL 108
>01_01_0988 -
7806113-7806193,7806275-7806499,7806589-7806709,
7807065-7807256,7807884-7807947,7808135-7808261,
7808338-7808411,7808494-7808598,7808763-7808865,
7808966-7809028,7809113-7809296,7809788-7809858
Length = 469
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2
Query: 95 SAIVVIFEAACWLSSC--IAQHVPQEVSED-NSARLV 196
S++++ F ++ W SSC +AQ + Q V+ D N R+V
Sbjct: 303 SSLILYFNSSEWESSCLIVAQSISQRVTMDLNCLRIV 339
>11_06_0240 + 21640163-21640172,21641062-21641384,21641395-21641565
Length = 167
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/14 (78%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
Frame = +2
Query: 347 CGPA-LHGEPVCAT 385
CGPA HGEP CAT
Sbjct: 72 CGPAGAHGEPSCAT 85
>08_01_1034 - 10482670-10483400,10483442-10483964
Length = 417
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 227 ASESSVSIATELVSHCCPRSLPAAHVA 147
A ++I+ EL CC R++PA H A
Sbjct: 104 AGVEQLTISIELHEGCCARAVPAVHGA 130
>03_05_0065 + 20450814-20452748
Length = 644
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 233 GLASESSVSIATELVSHCCPRSLPAAHVARY 141
GLASE A EL+S C R H+ R+
Sbjct: 610 GLASEGLAKEAQELLSELCSRGALRKHLMRH 640
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 26.6 bits (56), Expect = 8.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 367 PVQRR---PANARTRSVARCLARRREDKEGSSGEEVGP 263
PV RR P ARTRS++R AR + + S E P
Sbjct: 509 PVARRSRSPVKARTRSISRSSARSLQRRSRSRSLERSP 546
>01_03_0199 - 13730219-13730681,13731039-13731232,13731280-13731516
Length = 297
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 248 GDAGHGLASESSVSIATELVSHCCPRSLPAAHVARYKSSTSKPP 117
G AG L + +L + PR+ P++H SS PP
Sbjct: 151 GAAGQNLKKHKQYKPSLQLGAPRAPRAAPSSHPGASSSSAPPPP 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,987,269
Number of Sequences: 37544
Number of extensions: 165762
Number of successful extensions: 652
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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