Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0082
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    33   0.087
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    33   0.087
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    27   4.3  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 314 EASRDASCPRICGPALHGEPVCATDGYIYPSLCKMRKKT 430
           + + +  CP  C   +   PVCAT+G  + + C+M+KK+
Sbjct: 386 DRTAECECPNRCEDVMR--PVCATNGETFDNECEMKKKS 422



 Score = 29.9 bits (64), Expect = 0.81
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 326 DASCPRICGPALH---GEPVCATDGYIYPSLCKMRK 424
           +  CP  C P+     G+ VC TDG  Y S C M+K
Sbjct: 533 ECKCPDDC-PSYEMEEGKEVCGTDGVTYSSECHMKK 567



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 305 PTSEASRDASCPRICGPALHG----EPVCATDGYIYPSLCKMR 421
           P+  +  D  CP+ C     G      VC +DG  Y +LC+++
Sbjct: 853 PSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELK 895


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 314 EASRDASCPRICGPALHGEPVCATDGYIYPSLCKMRKKT 430
           + + +  CP  C   +   PVCAT+G  + + C+M+KK+
Sbjct: 394 DRTAECECPNRCEDVMR--PVCATNGETFDNECEMKKKS 430



 Score = 29.9 bits (64), Expect = 0.81
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 326 DASCPRICGPALH---GEPVCATDGYIYPSLCKMRK 424
           +  CP  C P+     G+ VC TDG  Y S C M+K
Sbjct: 541 ECKCPDDC-PSYEMEEGKEVCGTDGVTYSSECHMKK 575



 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 305 PTSEASRDASCPRICGPALHG----EPVCATDGYIYPSLCKMR 421
           P+  +  D  CP+ C     G      VC +DG  Y +LC+++
Sbjct: 792 PSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELK 834


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 332 SCPRICGPALHGEPVCATDGYIYPSLCKMRKK 427
           +C   C    H  P+CA+D   Y +LC+ RK+
Sbjct: 585 ACQMPCTDDKH--PICASDFSTYENLCQFRKQ 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,586,582
Number of Sequences: 27780
Number of extensions: 113937
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)