Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0082
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20920.1 68417.m03032 double-stranded RNA-binding domain (DsR...    30   0.58 
At4g20910.1 68417.m03031 double-stranded RNA binding protein-rel...    29   1.3  
At2g45760.1 68415.m05692 BON1-associated protein (BAP1)-related ...    28   2.3  
At5g18140.1 68418.m02130 DNAJ heat shock N-terminal domain-conta...    28   3.1  
At2g37660.1 68415.m04619 expressed protein                             26   9.4  

>At4g20920.1 68417.m03032 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 870

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 314 EASRDASCPRICGPALHGEPVCATDGYIYPSLC 412
           E SR+A    +CG  +HG+ + A+ GY +   C
Sbjct: 299 EKSRNAKASFVCGVDIHGDAIVASVGYPWRICC 331


>At4g20910.1 68417.m03031 double-stranded RNA binding
           protein-related / DsRBD protein-related contains weak
           similarity to Pfam profile PF00035: Double-stranded RNA
           binding motif
          Length = 942

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 SRDASCPRICGPALHGEPVCATDGYIYPS 406
           SR+A    ICG  +HG+ + A+ GY + S
Sbjct: 307 SRNARASYICGQDIHGDAILASVGYRWKS 335


>At2g45760.1 68415.m05692 BON1-associated protein (BAP1)-related
           similar to BON1-associated protein 1 BAP1 [Arabidopsis
           thaliana] GI:15487384; contains Pfam profile PF00168: C2
           domain
          Length = 207

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 409 ERGVDVPVGGADGLPVQRRPANARTRSVAR 320
           +R +++ V  A+GL V R+P   +T SV R
Sbjct: 7   KRSLEIEVISAEGLKVDRKPLKKKTYSVVR 36


>At5g18140.1 68418.m02130 DNAJ heat shock N-terminal
           domain-containing protein similar to DnaJ protein Tid-1
           [Homo sapiens] GI:17066575; contains Pfam profile
           PF00226 DnaJ domain
          Length = 333

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 59  LAFTKSRLTSSSSAIVVIFEAACWLSSCIAQHVP 160
           L F       +SS++VV+   A W+ S +A+H P
Sbjct: 279 LTFASWLCGKASSSVVVLVLVAMWVGSNLARHAP 312


>At2g37660.1 68415.m04619 expressed protein
          Length = 325

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 385 GGADGLPVQRRPANARTRSVARCLARRREDKEGSSGEE 272
           GG  G  V ++      + VAR L R +E KE  +GE+
Sbjct: 85  GGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGED 122


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,195,283
Number of Sequences: 28952
Number of extensions: 106109
Number of successful extensions: 314
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)