Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0080
         (494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     28   0.040
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   2.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.1  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 0.040
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +1

Query: 7   KEKAHNHYYNLYDFLSTNH-YYSK--RYRYSTFDRTTGNHTKYRINNIQTLHSNF 162
           KEKA   YY  YDF   NH  Y K   Y +     TT  +   ++N I     +F
Sbjct: 421 KEKADFQYYVSYDFYKMNHPVYHKDPHYGFHNVTNTTLQNLTPQLNYISMKLQSF 475


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 248 NSIENSSSQNGVVIEAEKTY 307
           N+I  +SSQ+ V I  E+T+
Sbjct: 539 NTITRASSQSSVTIPFERTF 558


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 369 TNIMIVATGKKPNPANT 319
           TNI + A G KPN  +T
Sbjct: 433 TNIEVQAKGGKPNVLST 449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,729
Number of Sequences: 336
Number of extensions: 2301
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)