Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0080
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   2.1  
SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   3.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   3.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   4.7  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   6.3  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   8.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.3  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   8.3  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 52  STNHYYSKRYRYSTFDRTTGNHTKYRINNIQTLHSN 159
           S NH  S   R  T + +TG+ TKY   +  +L+SN
Sbjct: 283 SPNHLASVPNRGLTSNSSTGSFTKYTNGSSNSLYSN 318


>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 328 CQHIRCCVC 302
           C HIRCC+C
Sbjct: 54  CLHIRCCIC 62


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 61  HYYSKRYRYSTFDRTTGN 114
           HYY++R +YS +D   G+
Sbjct: 686 HYYNERNQYSQYDNVAGS 703


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 70  SKRYRYSTFDRTTGNHTKYRINNIQTLHSNF 162
           +K+YR S+ D+ + NH K    + +++ SNF
Sbjct: 29  NKKYR-SSHDQVSSNHAKSSFPSHRSIQSNF 58


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 242 LSNSIENSSSQNGVVIEAEKTYTASYVLAGLGFLPVATIIIFVLRNLL 385
           +S S   +++Q   +I+    Y+A Y+  GL    V  II  V  NL+
Sbjct: 103 VSLSFTMNTAQGHSLIQTLSGYSAHYLALGLALFYVGYIIFEVPSNLM 150


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 168 SPLNRVQNPYQFRETLHLLNQRWSIYQI 251
           SP+N +  PY  R+ L + N  W + +I
Sbjct: 594 SPINVIITPYCSRQYLKIFNFLWRLKRI 621


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 364 YYDSCYRQETQSCQHIRCCVCFLSFNNN 281
           ++  C R     C+H+R C   LSF  N
Sbjct: 347 FFVPCARTLWAICRHLRTCPLSLSFRPN 374


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 246 DRLTTFDSTSVVFLETDRGFELDSED 169
           +R+TT + + VV  E   GF  D+E+
Sbjct: 82  NRITTLEQSKVVGKEIKNGFTFDAEN 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,764
Number of Sequences: 5004
Number of extensions: 38273
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)