Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0080
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1152 + 34939884-34941824                                         33   0.095
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995...    29   2.1  
05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110     28   4.7  
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409...    28   4.7  
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773...    27   8.3  
03_01_0589 - 4358097-4358216,4359752-4359844                           27   8.3  

>01_06_1152 + 34939884-34941824
          Length = 646

 Score = 33.5 bits (73), Expect = 0.095
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 248 NSIENSSSQNGVVIEAEKTYTASYVLAGLGFLPVATIIIFVLRNLLHKKTKEIDTEYEGY 427
           N++ ++ +QNG+ +EA + Y       G G  P A  ++ VL +  H   + +  + E Y
Sbjct: 237 NAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERY 296

Query: 428 FDD 436
             D
Sbjct: 297 VRD 299


>06_02_0164 +
           12498614-12498699,12498806-12498842,12499388-12499544,
           12499964-12500181,12500965-12501891
          Length = 474

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 314 SYVLAGLGFLPVATIIIFVLRNLLHKKTKE 403
           SYVLA   F  VA  ++  LR +LH++  E
Sbjct: 95  SYVLANFAFFGVAVGLVVFLRQVLHQENAE 124


>05_05_0184 + 23059430-23060062,23060654-23060803,23061033-23061110
          Length = 286

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 135 VDSIFCVVPGSSVECAIP 82
           V +IFC++ GSS  CAIP
Sbjct: 43  VIAIFCILVGSSAGCAIP 60


>01_01_0556 +
           4090432-4090500,4091414-4092030,4092408-4092533,
           4092619-4092895,4093021-4093251
          Length = 439

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 346 RQETQSCQHIRCCVCFLSFNNNPILR 269
           ++ T S +   CC+C   F+NN  LR
Sbjct: 354 KERTISAEDAVCCICLSKFSNNEDLR 379


>03_06_0344 -
           33276366-33276548,33277044-33277169,33277254-33277322,
           33277401-33277505,33277595-33277633,33277717-33278016,
           33278093-33278182,33278271-33278312,33278433-33278516,
           33278762-33278947,33279218-33279403,33279663-33280025
          Length = 590

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 224 ESKVVNLSNSIENSSSQNGVVIEAEKTYTASYVLA 328
           E+KV NL + +EN   +N  + ++ K    SY+LA
Sbjct: 478 ENKVPNLQSHLENIVGENYFLNQSAKEAYRSYILA 512


>03_01_0589 - 4358097-4358216,4359752-4359844
          Length = 70

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 135 VDSIFCVVPGSSVECAIPVS 76
           V   F  VPG+S  CAIP+S
Sbjct: 51  VSGAFAAVPGTSSACAIPLS 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,622
Number of Sequences: 37544
Number of extensions: 203183
Number of successful extensions: 471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)