Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0079
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 248 4e-67
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 28 1.4
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 27 1.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.8
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 3.2
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 4.2
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 5.5
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.5
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 26 5.5
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 9.7
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 9.7
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 248 bits (608), Expect = 4e-67
Identities = 115/208 (55%), Positives = 151/208 (72%)
Frame = +2
Query: 11 KGLAVFTSGGDSQGMNAAVRSVVRMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSVSS 190
K +AV TSGGDS GMNA VR+V R+ I+ GC + I EGY+G+V GGD I++ W V
Sbjct: 195 KKIAVMTSGGDSPGMNAVVRAVARIAIHRGCDAFAIYEGYEGLVQGGDMIKQLQWGDVRG 254
Query: 191 IIHKGGTIIGSARCMEFIKKEGRLKAAYNLVSRGITNLVVIGGDGSLTGANLFRQEWSSL 370
+ +GGT+IG+ARCM F ++ GRL+AA NL+S GI +++V GGDGSLTGA++FR +W L
Sbjct: 255 WLAEGGTLIGTARCMAFRERPGRLRAAKNLISAGIDSIIVCGGDGSLTGADIFRSDWPGL 314
Query: 371 LDELLENNKITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDAIVST 550
+ EL + IT +Q + Y+ L I G+VGSIDND TD+TIG S+LHRI EA+D+I ST
Sbjct: 315 VKELEDTKAITPEQAKLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRICEAVDSISST 374
Query: 551 AYSHQRTFIMEVMGRHCGYFGPCPALAS 634
A SH R FI+EVMGRHCG+ ALA+
Sbjct: 375 AISHSRAFIVEVMGRHCGWLAVLAALAT 402
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 381 CWRTTKLLKIKGKNINFCT*LEWLVQLTMI 470
CW +++K+ G IN +WL+++T++
Sbjct: 233 CWWINEVIKVNGSLINVWRRKQWLLEVTIM 262
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/112 (21%), Positives = 46/112 (41%)
Frame = +2
Query: 128 YQGMVDGGDNIEEANWSSVSSIIHKGGTIIGSARCMEFIKKEGRLKAAYNLVSRGITNLV 307
YQ + D E+ ++ S ++ GGT G R +++IK G + + + I+
Sbjct: 25 YQVLTDRFALDEDNFYAKASGNLYLGGTWKGITRNLDYIKSLGCTAIWISPIVKNISETT 84
Query: 308 VIGGDGSLTGANLFRQEWSSLLDELLENNKITKDQREKYKFLHIAGMVGSID 463
G + W+ + +L EN +D +E +H M+ +D
Sbjct: 85 DCG--------QAYHGYWAQDMTQLNENFGTEEDLKELVNAIHEKNMLCMVD 128
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 326 SLTGANLFRQEWSSLLDEL 382
S+ AN+FR EWS+ LD +
Sbjct: 487 SILRANMFRNEWSNFLDSV 505
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 323 GSLTGANLFRQEWSSLLDELLENNKITKDQREKY 424
G L G+ + +E S +D+L+E KI +RE++
Sbjct: 39 GILKGSKTWLEELESTIDDLIEVKKIGAKEREEH 72
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 156 LSPPSTMPWYPSRIKYTLHPKYMPIR 79
+ PP+ +PWYP + Y + + IR
Sbjct: 95 IPPPTVLPWYPDGLAYIVDAQKDVIR 120
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -1
Query: 330 SEPSPPITTRFV-IPRLTKLYAALRRPSFLMN 238
SEP P I++ + + RLT YAA+R SFL++
Sbjct: 134 SEPLPSISSLDLDVLRLTARYAAVRGSSFLVS 165
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 302 LVVIGGDGSLTGANLFRQEWSSLLDELLENNK 397
L +IGG G G N++ + WS + +L N K
Sbjct: 908 LFIIGGIGMNVGTNVWLKHWSEVNTQLGYNPK 939
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 374 DELLENNKITKDQREKYKFLHIAGMVGSIDNDFCGTDMTIGTDSALHRIIEAIDAI 541
+E E ++ + +R K + S DND D T+G +AL I ++D++
Sbjct: 159 EESAERRRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTTVGIGAALAASILSVDSV 214
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +2
Query: 359 WSSLLDELLENNKITKDQREKYKF 430
W +++D L E + + ++E YKF
Sbjct: 326 WDAMIDSLYETINVEETKKETYKF 349
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 442 SYVQKFIFFPLIFSNFVVLQQFI 374
SY KF+FFP + + V +Q I
Sbjct: 20 SYSSKFLFFPCLIMSLVFMQWLI 42
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 326 SLTGANLFRQEWSSLLDELLENNKIT 403
S+T Q W LL+ L NN+IT
Sbjct: 228 SVTAVTTLAQTWPKLLNLSLANNRIT 253
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 260 LKAAYNLVSRGITNLVVIGGDGSLTGANLFRQEWSSLLDELLENNKITKDQREKYKFLH 436
+ A+ ++ G + +V S N F++ W SL+D+L K KD+ + YK +H
Sbjct: 421 VSGAFGWINDGSVDFLVNISFPSEPSENSFQKAWISLMDKL---KKKEKDE-DVYKDVH 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,616
Number of Sequences: 5004
Number of extensions: 56159
Number of successful extensions: 176
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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