Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0079
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42230| Best HMM Match : PFK (HMM E-Value=0) 131 6e-31
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21) 31 1.1
SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08) 30 1.5
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26) 30 1.5
SB_51649| Best HMM Match : PAN (HMM E-Value=0.063) 29 4.4
SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_57035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_26951| Best HMM Match : CUB (HMM E-Value=0) 28 7.7
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 28 7.7
SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_42230| Best HMM Match : PFK (HMM E-Value=0)
Length = 1103
Score = 131 bits (316), Expect = 6e-31
Identities = 61/91 (67%), Positives = 71/91 (78%)
Frame = +2
Query: 290 GITNLVVIGGDGSLTGANLFRQEWSSLLDELLENNKITKDQREKYKFLHIAGMVGSIDND 469
GI VVIGGDGSLTGAN F+QEW+ LL+EL+ IT + K L+I GMVGSIDND
Sbjct: 644 GIIQQVVIGGDGSLTGANYFKQEWTGLLEELVSKGSITPEMAAKNNSLNIVGMVGSIDND 703
Query: 470 FCGTDMTIGTDSALHRIIEAIDAIVSTAYSH 562
FCGTDMTIGTD+ALHRI EA+DAI +TA S+
Sbjct: 704 FCGTDMTIGTDTALHRIFEAVDAITTTAMSY 734
Score = 78.6 bits (185), Expect = 4e-15
Identities = 46/86 (53%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Frame = +2
Query: 50 GMNAAVRSVVRMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSVSSIIHK---GGTIIG 220
GMNAA+R+VVRM +Y G KVY I EGYQG+VDGGDNI+E W VS II + GG G
Sbjct: 598 GMNAAIRAVVRMAMYTGAKVYTIWEGYQGLVDGGDNIKEVTWEDVSGIIQQVVIGGD--G 655
Query: 221 SARCMEFIKKE--GRLKAAYNLVSRG 292
S + K+E G L+ LVS+G
Sbjct: 656 SLTGANYFKQEWTGLLE---ELVSKG 678
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 542 VSTAYSHQRTFIMEVMGRHCGYFGPCPALAS 634
+S SH+R F++E MG +CGY ALAS
Sbjct: 1014 MSALSSHKRVFVIECMGGYCGYLATMSALAS 1044
>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
Length = 457
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +2
Query: 182 VSSIIHKGGTIIGSARCMEFIKKEGRLKAAYNLVSRGITNLVVIGGDGSLTGANL 346
V+ ++ GGTI+G A C E AA V + N GG S GA L
Sbjct: 131 VTRVLDAGGTIVGKAVCEELSISGSSFTAATGPVMNPLDNRRETGGSSSGCGALL 185
>SB_52724| Best HMM Match : adh_short (HMM E-Value=5.1e-08)
Length = 316
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/78 (33%), Positives = 36/78 (46%)
Frame = +2
Query: 59 AAVRSVVRMGIYLGCKVYFIREGYQGMVDGGDNIEEANWSSVSSIIHKGGTIIGSARCME 238
AA+R+VV + + L VYFIRE QG V EA + II T IG ++
Sbjct: 2 AALRNVVIV-VVLAIAVYFIREHCQGRV----CTSEARLDGKTVIITGATTGIGKETAVD 56
Query: 239 FIKKEGRLKAAYNLVSRG 292
K+ R+ + RG
Sbjct: 57 LAKRGARVIIGARNLDRG 74
>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
Length = 212
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 48 RE*MPLCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTGLLLAL*FT 200
R+ + LCD + G KY+L V D + V+ LK +TG L FT
Sbjct: 5 RQQVDLCDMQAFHRHNEGFKYLLTVIDLLSKFAWVVPLKDKTGASLVAAFT 55
>SB_51649| Best HMM Match : PAN (HMM E-Value=0.063)
Length = 323
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +2
Query: 197 HKGGTIIGSARCMEFIKKEGRLKAAYNLVSRGITNLVVI 313
++ T + S C++++K+ YN+ G+T+LV +
Sbjct: 80 YRENTAVESKSCLDYLKRGAADNGVYNIHVEGVTHLVPV 118
>SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G KY+L V D + V++LK +TG
Sbjct: 110 LCDVQSLSSYNNGNKYLLTVIDVLSKYALVVSLKDKTG 147
>SB_51082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G KYIL V D + + LK +TG
Sbjct: 149 LCDMQSLSSYNDGYKYILSVIDVLSKYGWAVALKDKTG 186
>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2337
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G Y+L V D + V+ LK +TG
Sbjct: 1024 LCDMQALRSYNDGYNYLLIVIDLLSKYAWVVPLKDKTG 1061
>SB_57035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G Y+L V D + V+ LK +TG
Sbjct: 255 LCDMQALRSYNDGYNYLLTVIDVLSKYAWVVPLKDKTG 292
>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1602
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G Y+L V D + V+ LK +TG
Sbjct: 117 LCDMQALRSYNDGYNYLLTVIDVLSKYAWVVPLKDKTG 154
>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
Length = 794
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 572 FIMEVMGRHCGYFGPCPALASRQTKYL 652
F+ +V+GR+CG GP +S + Y+
Sbjct: 697 FVGDVIGRYCGQGGPGTVTSSESSMYI 723
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G Y+L V D + V+ LK +TG
Sbjct: 641 LCDMQALRSYNDGYNYLLTVIDVLSKYAWVVPLKDKTG 678
>SB_26965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 827
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 63 LCDQSCVWAYT*GVKYILFVKDTRAW*MEVITLKKRTG 176
LCD + +Y G Y+L V D + V+ LK +TG
Sbjct: 764 LCDMQALRSYNDGYNYLLTVIDVLSKYAWVVPLKDKTG 801
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,112,354
Number of Sequences: 59808
Number of extensions: 425845
Number of successful extensions: 1127
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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