Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0076
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    33   0.047
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    29   0.76 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   3.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.1  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 164 VFQAVKTVRRHRPQLVENMTEYKYCYD 244
           VFQ V  +R+ R ++V+  T++KY YD
Sbjct: 508 VFQLVDHIRKQRMKMVQTFTQFKYVYD 534


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 164 VFQAVKTVRRHRPQLVENMTEYKYCYD 244
           +F  V ++R  R ++V+N  ++K+ YD
Sbjct: 667 IFNCVNSLRSQRMKMVQNFEQFKFLYD 693


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 359 PTTPEETSPSAAPRDHKRPQRPRRGLS 439
           P  P  +S S  PR   +P  P RGLS
Sbjct: 419 PPPPPISSSSTTPRPDDKPSLPPRGLS 445


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 52  DRLRTSLRCITGWTQPGRGLLRSQRVHRTSHKARRGGRVSSCE-DCST 192
           DR+  +LRCI   T   RG L ++ +H +  +  R G     E DC T
Sbjct: 262 DRVVRALRCIENNTPITRGTLLTEFLHWSYDELSRIGLPREFEYDCRT 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,827,922
Number of Sequences: 5004
Number of extensions: 29308
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)