Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0076
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 38 0.005
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432... 30 1.4
04_04_0009 + 22134160-22134696 30 1.4
10_02_0188 - 6473353-6473432,6473619-6474816 29 3.2
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 29 3.2
01_01_0083 + 631196-631675 26 3.3
09_02_0195 + 5643549-5645090 29 4.2
04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995... 29 4.2
03_06_0704 + 35641774-35642031,35642122-35642446,35642546-356426... 29 4.2
12_02_0030 + 12469707-12469902,12470337-12470658,12472208-124722... 28 5.5
08_02_0830 - 21617485-21618198 28 5.5
08_01_0479 - 4213705-4214067 28 5.5
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202... 28 5.5
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 28 5.5
09_02_0546 - 10454404-10455687 28 7.3
01_06_0111 + 26552513-26553361 28 7.3
11_06_0016 - 19284810-19284926,19285527-19286879 27 9.7
10_02_0175 - 6207485-6207898 27 9.7
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 27 9.7
01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228... 27 9.7
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = +2
Query: 17 ELMNMVERWRQRTDYG-PVCVVSPDGRSRAGVYCAANACIEQVI--KHGEVDVFQAVKTV 187
+ + + +W Q T P+ V G R G Y ++ IE+++ + + VKT+
Sbjct: 236 DAVRQIRKWLQNTPMEHPIVVHCSAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTL 295
Query: 188 RRHRPQLVENMTEYKYCY 241
R R +V+ +Y +CY
Sbjct: 296 RTQRVGMVQTEKQYMFCY 313
>09_03_0079 +
12142390-12142459,12142792-12143006,12143050-12143268,
12143345-12143932
Length = 363
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -3
Query: 619 GGGSRSAAKG*PAFIRRGVVVFKANRATQRRAVPTGTTRGFDGSGVRQLRTSGRGQQAVQ 440
GGG R + P +R + + RAV RG G+G R RG++
Sbjct: 256 GGGRRGESSSFPGILRAALRCAQLPERHFARAVRAALERGEGGAGAD--RRDARGRRRAP 313
Query: 439 REPAAR 422
R+P R
Sbjct: 314 RQPGVR 319
>04_04_0009 + 22134160-22134696
Length = 178
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 462 PLVLSCRTPLPSKPLVVPVGTALRCVALFALKTTTPRRMNAG 587
PLVL P PS ++VPV + +AL + TTT +AG
Sbjct: 119 PLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSSAG 160
>10_02_0188 - 6473353-6473432,6473619-6474816
Length = 425
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +1
Query: 40 LATADRLRTSLRCITGWTQPGRGLLRSQRVHR-----TSHKARRGGRVSSCEDCSTTPAT 204
+ T D +R + T W PG + + R T H GGRVS ED +
Sbjct: 124 MRTEDEVRKMIITSTEWPPPGMTRRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQVSSD 183
Query: 205 ARREHDR 225
E +R
Sbjct: 184 DEDEMER 190
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = +1
Query: 40 LATADRLRTSLRCITGWTQPGRGLLRSQRVHR-----TSHKARRGGRVSSCEDCSTTPAT 204
+ T D +R + T W PG + + R T H GGRVS ED +
Sbjct: 124 MRTEDEVRKMIITSTEWPPPGMTKRQRRNTFRGAPQLTEHLLANGGRVSDSEDSDQVSSD 183
Query: 205 ARREHDR 225
E +R
Sbjct: 184 DEDEMER 190
>01_01_0083 + 631196-631675
Length = 159
Score = 26.2 bits (55), Expect(2) = 3.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 420 ALAAGSLWTACCPRPLVLSCRTPL 491
ALAAG + A CP P +L TP+
Sbjct: 17 ALAAGDTYPADCPYPCLLPPPTPV 40
Score = 21.4 bits (43), Expect(2) = 3.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +3
Query: 591 PLAADLEPPPSTKAT 635
P+ D PPPST ++
Sbjct: 39 PVTTDCPPPPSTPSS 53
>09_02_0195 + 5643549-5645090
Length = 513
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 520 PTGTTRGFDGSGVRQLRTSGRG---QQAVQREPAARALGPLVV 401
P G+T G GS + L +SG G Q P A +GPL++
Sbjct: 56 PRGSTHGDQGSSQQPLASSGEGSSRQAHTTAPPPAGLIGPLML 98
>04_03_0768 -
19396146-19396607,19397855-19398175,19398424-19399569,
19400073-19400855,19402114-19402149
Length = 915
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 547 NRATQRRAVPTGTTRGFDGSGVRQLRTSGRGQQAVQREPAARALGPLV 404
+R T +++ TGT D +G Q RTSG + + A A P V
Sbjct: 678 HRVTDSKSMNTGTEGPRDAAGTLQNRTSGELASSSHKSSATSAQKPAV 725
>03_06_0704 +
35641774-35642031,35642122-35642446,35642546-35642699,
35643662-35643706,35644121-35644180,35644532-35644694,
35645356-35645717,35645985-35646303
Length = 561
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 353 ALPTTPEETSPSAAPRDHKRPQRPR 427
+LP T + P +P HK P+RP+
Sbjct: 121 SLPPTTTQRDPKPSPPQHKAPERPQ 145
>12_02_0030 +
12469707-12469902,12470337-12470658,12472208-12472245,
12472486-12473573
Length = 547
Score = 28.3 bits (60), Expect = 5.5
Identities = 24/76 (31%), Positives = 30/76 (39%)
Frame = -3
Query: 640 ADVAFVEGGGSRSAAKG*PAFIRRGVVVFKANRATQRRAVPTGTTRGFDGSGVRQLRTSG 461
A V VEGGGS + +G A + G A R A G R S R G
Sbjct: 90 AGVRRVEGGGSGAVGEGARAAVLGGAATIGARRLWAGGAARGGFGRRRGASSTHAWR-PG 148
Query: 460 RGQQAVQREPAARALG 413
G++ +R A R G
Sbjct: 149 AGRRKGRRRAARRRSG 164
>08_02_0830 - 21617485-21618198
Length = 237
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 32 VERWRQRTDYGPVCVVSPDGRSRAGVYCAANAC 130
VERW R + G S S +G+ C A++C
Sbjct: 62 VERWDARKEAGSSAASSSSSSSSSGLPCRADSC 94
>08_01_0479 - 4213705-4214067
Length = 120
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 526 AVPTGTTRGFDGSGVRQLRTSGRGQQAVQREPAARALGP 410
AVP + F G GV + G G AV R ++GP
Sbjct: 50 AVPPARSSSFAGGGVTRFVGGGGGAAAVPRPEEVASMGP 88
>02_05_0140 -
26218828-26219759,26219885-26220002,26220089-26220278,
26220380-26220514,26220617-26220714,26221697-26221866,
26222586-26222961
Length = 672
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Frame = -3
Query: 253 EN*IVAVLVFGHVLDELWPVSSNSLHSLKHVHLA-------VLYDLFDARVGCAVDP 104
+N ++A LV G ++ +L VS++ +H LK HL ++ +L +GC + P
Sbjct: 462 DNGVIAGLVVGTLVKQLVLVSADLMHDLKTGHLTLTSPRSMLVGELIGTGIGCFIAP 518
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 95 SRAGVYCAANACIEQVIKHGEVDVFQAVKTVRRHRPQLVENMTEYKYCYD 244
++ V CA +E +K+GEV + +T R Q + N+ + +D
Sbjct: 648 NKDAVICALGGLLEDALKNGEVLAYHVYRTCLRMDGQTLVNLEIFSNNFD 697
>09_02_0546 - 10454404-10455687
Length = 427
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +1
Query: 40 LATADRLRTSLRCITGWTQPGRGLLRSQRVHR-----TSHKARRGGRVSSCED 183
+ T D +R + T W PG + + R T H GGRVS ED
Sbjct: 124 MRTEDEVRKMIITSTEWPPPGMTRRQRRNTFRGATQLTEHLLANGGRVSGSED 176
>01_06_0111 + 26552513-26553361
Length = 282
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +3
Query: 423 LAAGSLWTACCPRPLVLSCRTPLPSKPLVVPVGTALRCVALFALK---TTTPRRMNAG*P 593
+A+GS T CC L P PS+P P T + + F+L + R G P
Sbjct: 24 VASGSSTTNCCCFFLSRRTSEPPPSRPANSPCYTIIILPSFFSLSSHLSCVAVRGGLGVP 83
Query: 594 LAADLEP 614
L A EP
Sbjct: 84 LTATHEP 90
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/55 (38%), Positives = 26/55 (47%)
Frame = +3
Query: 459 RPLVLSCRTPLPSKPLVVPVGTALRCVALFALKTTTPRRMNAG*PLAADLEPPPS 623
+P LS + LPS+P + PVG R + P AG A D EPPPS
Sbjct: 38 QPSSLSSQFSLPSRPPLHPVGD--RAIH----PPMPPASAAAGDGAAPDQEPPPS 86
>10_02_0175 - 6207485-6207898
Length = 137
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 43 ATADRLRTSLRCITGWTQPGRGLLRSQRVHRTSHKARRGGRVSSCEDCSTTPATARR 213
A ADR+ + R GW + GRG R +R + RR R + A ARR
Sbjct: 4 AAADRMEEASRRGGGWRRRGRGGGRRRRHGCGGGRKRRRRRRAEAATARWRAAAARR 60
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 79 ITGWTQPGRGLLRSQRVHRTSHKARRGGRVSSCE 180
+T W+Q G ++ R++RT +KA SC+
Sbjct: 314 VTKWSQRGVNIIYRHRLNRTGYKAGNLKSAMSCD 347
>01_06_1820 +
40120861-40120863,40122484-40122612,40122710-40122895,
40123679-40123867,40124229-40124563,40124977-40125400
Length = 421
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 115 RSQRVHRTSHKARRGGRVSSCEDCSTTP 198
R +VHR +K R GGR C+D ST P
Sbjct: 275 RKGQVHRRFYKTRGGGR---CDDNSTGP 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,195,022
Number of Sequences: 37544
Number of extensions: 257933
Number of successful extensions: 1059
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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