Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0076
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        26   0.36 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.7  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 146 KHGEVDVFQAVKTVRRHRPQLVENMTEYKYCYD 244
           K+G++ + + +K  +R RP        Y YCY+
Sbjct: 191 KYGQLFMEETLKAAKRMRPAANWGYYAYPYCYN 223


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 102 ARLRPSGDTTQTGP*SVRCRQRSTMFISSTSEL 4
           AR+RPSG+    GP  VR      +F+ S S++
Sbjct: 45  ARIRPSGENATDGPAVVRV----NIFVRSISKI 73


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 102 ARLRPSGDTTQTGP*SVR 49
           AR+RPSG+    GP  VR
Sbjct: 45  ARIRPSGENATDGPAIVR 62


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 112 VDPGPAASIR*YNADWSVVCPLSPAFHHV 26
           VD  P   +   +A+W    PL+P +H +
Sbjct: 26  VDKVPPDMLHLIDANWYQYPPLNPMWHGI 54


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 55  RLRTSLRCITGWTQPGR 105
           R++ S  C  GW  P R
Sbjct: 144 RVKDSTNCNCGWKNPSR 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,993
Number of Sequences: 438
Number of extensions: 2198
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)