Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0075
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   0.59 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   2.4  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   9.7  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    24   9.7  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    24   9.7  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 278 FSRGCLRRWLCSFFTYTGTGWKCSNLID 195
           FS+G ++  +   FTY+G G KC  ++D
Sbjct: 139 FSKGLMKS-MTHLFTYSGMGAKCKKVLD 165


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 220 PVPVYVKKEHSHLLKHPLEKGKSEQNLKL 306
           P P+ +KK +S LLK     G   QN KL
Sbjct: 269 PEPLTIKKVYSTLLKIADSNGNGAQNRKL 297


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 109 VEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFH 219
           ++  +D QSL+GE  +  + + E  KS  S +F  F+
Sbjct: 431 LDLSFDFQSLMGEFENLIKQQEEAKKSLWSKRFSRFY 467


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 10  NSNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEH 180
           +S LA K++  +   + A  +     +  ++ QV  ++ H  L G SG H    HEH
Sbjct: 342 SSELAQKVEKTVLDAIPALSSCIVTPLSSDSNQVH-RWQH--LNGSSGEHSHPSHEH 395


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 145 ESGHHHQIEHEHAKSH 192
           E  HHH   H H  SH
Sbjct: 297 EGHHHHHHHHHHHHSH 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,100
Number of Sequences: 5004
Number of extensions: 34481
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)