Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0075
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1083 - 23840789-23841634,23841991-23842017,23844401-238444... 34 0.047
05_01_0214 - 1615519-1616775 33 0.082
08_02_0707 - 20212190-20214592 30 0.76
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 1.0
12_02_0063 + 13098519-13099585,13099759-13099906 29 1.3
02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579... 29 1.8
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 29 1.8
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 28 2.3
11_01_0404 + 3071412-3071464,3073572-3074970 28 3.1
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 3.1
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 28 3.1
10_08_0416 + 17770384-17770992 27 4.1
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 27 5.4
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 27 5.4
03_05_0301 + 22928864-22929787 27 5.4
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 27 5.4
02_04_0153 - 20330775-20330831,20330913-20330999,20333119-203331... 27 7.1
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 27 7.1
05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899... 26 9.4
03_02_0332 + 7559469-7560892,7563193-7563298,7563403-7563491,756... 26 9.4
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 26 9.4
>07_03_1083 -
23840789-23841634,23841991-23842017,23844401-23844442,
23844882-23845002,23845824-23846062
Length = 424
Score = 33.9 bits (74), Expect = 0.047
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 1 VRYNSNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHH 162
V YN N TK+ +H+F+ L+ P +A VE + H S++ GHHH
Sbjct: 157 VCYNVN-CTKLSHHLFMHLVQN-PRLPLRFVVQAMLVEQLHSHHSMLLSGGHHH 208
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.1 bits (72), Expect = 0.082
Identities = 28/93 (30%), Positives = 37/93 (39%)
Frame = +1
Query: 55 LIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVY 234
L+ AV+AF G+ + V +DH GH H H H H +H H +
Sbjct: 161 LMFAVSAF-GLFVNIIMAVLLGHDHGH---GHGHGHGHGHSHDHDHGGSDHDHHH----H 212
Query: 235 VKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKH 333
+EH H+ H G S HP T H H
Sbjct: 213 EDQEHGHVHHHEDGHGNSITVNLHHHPGTGHHH 245
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 0.76
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 91 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFH 219
H+ + K +H G HHH H+H++ HQ +H H
Sbjct: 565 HNSLTENSCKENHSHCHGHDHHHHH-HHDHSEHHQQ-SGDHAH 605
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 118 KYDHQSLIGESGHHHQIEHEHAKSHQS 198
K+ H LI E G+ Q+E++H K+ QS
Sbjct: 159 KHHHIQLIKEKGNFSQLENDHEKASQS 185
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = +3
Query: 117 EIRPPVFDW*IWTPSSN*ARTRQISPVDQVRTLPPRSCVREEGAQPPSQASS*KGKIRAK 296
E+ PP + P + A RQ+ PV + PP+ A+PP KG + AK
Sbjct: 180 ELAPPPYPAAQAAPQAP-APPRQV-PVITQQQAPPQKRPAAPVAEPPCATKKMKGAVSAK 237
Query: 297 PQADSS 314
P A S
Sbjct: 238 PMAPQS 243
>02_03_0052 -
14456925-14457176,14457277-14457437,14457843-14457914,
14458105-14458221,14458310-14458322,14458917-14458946,
14459837-14460010,14460276-14460417,14460731-14460792,
14461047-14461643
Length = 539
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +3
Query: 129 PVFDW*IWTPSSN*ARTRQISPVDQVRTLPPRSCVREEGAQPPSQASS*KGKIR 290
P W I +PSS R ++P D V +PP + V A PP S G R
Sbjct: 115 PSPSWVINSPSS-----RPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCR 163
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 28.7 bits (61), Expect = 1.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -1
Query: 221 GWKCSNLIDW*DLACSCSI**WCPDSPIKDWWSYFASTWGASSCIIPGKAVTAAMSPRKI 42
G CS LI + CS S +C D P+++ + +W S+ P VT ++ +KI
Sbjct: 310 GIACSFLIKCKNSTCSRSFHTFCLDPPLQEIIGTWECSWCKSNA-APAVKVTEVLTSKKI 368
Query: 41 WYFILVARLL 12
+ R+L
Sbjct: 369 QRLVGHRRIL 378
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 106 QVEAKYDHQSLIGESGHHHQIEHEHAKSHQ 195
++E + + Q +G H H EHEH ++HQ
Sbjct: 290 EIELEEEEQRQLGHHHHQHHHEHEH-ENHQ 318
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 142 GESGHHHQIEHEHAKSHQSIKFEH 213
G+ HHH H+K+H S + EH
Sbjct: 118 GKIAHHHHHHRHHSKNHGSDEEEH 141
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/66 (24%), Positives = 24/66 (36%)
Frame = +1
Query: 91 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHP 270
H + +DH+ GH H H H + H HP V+ H +H
Sbjct: 530 HQKGRHHRHHHDHRH---RHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHS 586
Query: 271 LEKGKS 288
E G++
Sbjct: 587 HEAGRN 592
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQ 294
HHHQ ++EH I F+H Y + +H + H + + +Q
Sbjct: 157 HHHQQQYEH---QNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQ 200
>10_08_0416 + 17770384-17770992
Length = 202
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = +1
Query: 166 IEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHP 270
+ H H H H H +P V+ L +HP
Sbjct: 76 LAHVHGHGHAHPNLHHLHSIPANVQIRRPELPEHP 110
>12_02_1015 +
25331667-25332169,25333305-25333406,25333775-25333919,
25334002-25334186,25334297-25334401,25334507-25334604,
25334686-25334924,25335030-25335123,25335190-25335275,
25335579-25335677,25335804-25335869
Length = 573
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 216 PPRSCVR-EEGAQPPSQASS*KGKIRAKPQADSS*D*TQARRWTCPRGGARYPIRPIV 386
PPR + +E A PP K ++ + S + +AR W GG R P +V
Sbjct: 47 PPRRALHFDEAAPPPPPEKKVKVEVVEVDSSSSEEEEREARGWVEVGGGRRVPGEVVV 104
>03_05_0488 - 24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 117 RFDLGSFIMYYSRKSSHCGNESQEDMVLHLGR*ITVVP 4
RF G I +S +++CG + +L LGR + VVP
Sbjct: 891 RFAQGHLITLFSA-TNYCGTANNAGAILVLGRDLVVVP 927
>03_05_0301 + 22928864-22929787
Length = 307
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 73 AFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEH 180
A P + PQ + + H + + HHH H H
Sbjct: 257 ALPYHMEPSPPQPSSGHSHDEVSQQQHHHHHHRHHH 292
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 37 YHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEH 180
+H F L +++ P II + + A + H G SGHHH I+ EH
Sbjct: 166 WHAFDVLQGVMSSAPDIIGNVS---HAHHSH----GSSGHHHGIDLEH 206
>02_04_0153 -
20330775-20330831,20330913-20330999,20333119-20333157,
20333596-20333754,20334035-20334104,20334187-20335035,
20335270-20335562,20335640-20336347
Length = 753
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -2
Query: 247 APSSRTQERGGSVRT*STGEIWRVRAQFDDGVQIHQSKTGGRISLRLGELHH---VLFQE 77
AP S+ + S+ G++ R AQF+ G+ + + + + ELH L
Sbjct: 507 APESKRGKAATSMPVSKAGKVMRAPAQFELGIALVEDNVLAVMGIACRELHKQYMELSNA 566
Query: 76 KQSLRQ 59
KQ +R+
Sbjct: 567 KQKMRE 572
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 287 DFPFSRGCLRRWLC 246
DF FSRG LR W C
Sbjct: 118 DFTFSRGRLREWRC 131
>05_05_0155 +
22787658-22787930,22788029-22788096,22789600-22789915,
22790207-22790323
Length = 257
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/39 (35%), Positives = 15/39 (38%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHP 270
HHH H H H H HP P + H H HP
Sbjct: 47 HHHPPHHPHPPHHPHPP-HHPHP-PHHPHPPHHHPHPHP 83
>03_02_0332 +
7559469-7560892,7563193-7563298,7563403-7563491,
7563780-7563841,7564247-7564278
Length = 570
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 201 QVRTLPPRSCVREEGAQPPSQASS*KGKIRAKPQADSS 314
+V++ R CV EG +ASS +GK+ P+ + +
Sbjct: 65 EVKSARARECVVSEGWVEVGRASSAEGKLECLPEEEEA 102
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 145 HQSKTGGRISLRLGELHHVLFQEKQSLRQ 59
HQ K ISLR EL H++ ++ LR+
Sbjct: 778 HQRKEANSISLRNAELMHLVVDYEKRLRE 806
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,830,815
Number of Sequences: 37544
Number of extensions: 256337
Number of successful extensions: 854
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -