Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0075
(392 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.58
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.77
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 1.0
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 1.8
SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 28 2.3
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9) 28 2.3
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7) 28 2.3
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 28 3.1
SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38) 28 3.1
SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4) 28 3.1
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 4.1
SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 27 4.1
SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_44998| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019) 27 4.1
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89) 24 6.1
SB_57725| Best HMM Match : Peptidase_C54 (HMM E-Value=3.8e-05) 27 7.2
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 27 7.2
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6) 23 9.1
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 26 9.5
SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 30.3 bits (65), Expect = 0.58
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +1
Query: 55 LIAAVTAFPGIIHDEAPQV--EAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVP 228
L +A+T G I + QV E +HQ L+ H E E+ K + + +H H
Sbjct: 436 LESAITVLEGRIKEREEQVRNELHEEHQYLMENLKKEHFEEVENLKHEHAAELDHLHETL 495
Query: 229 VYVKKEHSHL 258
V+ E+ L
Sbjct: 496 ESVQMENGEL 505
>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1163
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 145 ESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSH 255
+S + + H++ H I F + HP+PV +KK H
Sbjct: 613 DSASNFKSIHDNLLQHVQIPFFNIHPMPVSLKKSFCH 649
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.5 bits (63), Expect = 1.0
Identities = 11/34 (32%), Positives = 13/34 (38%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSH 255
HHH +H H H + H H Y H H
Sbjct: 218 HHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHHHH 251
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/34 (29%), Positives = 12/34 (35%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSH 255
HHH H+H H H H + H H
Sbjct: 216 HHHHHHHQHNHHHHHHNHHHHHHHHYHHYHHHHH 249
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 145 ESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKK 243
E + H+ EHEH S I FE P+P V++
Sbjct: 3130 EEANEHEQEHEHDTSGDHIHFEPIIPLPDKVER 3162
>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 28.7 bits (61), Expect = 1.8
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = +1
Query: 13 SNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYD-HQSLIGESGHHHQIE-HEHAK 186
+ +AT KY +A T F H +V A+Y HQ + H HQ + H
Sbjct: 239 ATMATNTKYS--RATMATNTVFARY-HGHQYKVFARYHGHQYKVFARYHGHQYKVFAHYH 295
Query: 187 SHQSIKFEHFHPVPVYVKKEHSHLLK 264
HQ F +H V+ H H K
Sbjct: 296 GHQYKVFARYHGHQYSVRARHGHQYK 321
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Frame = +1
Query: 115 AKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLK------HPLE 276
A H + S H I H H + HP Y H H+ + HP
Sbjct: 29 ASTTHPHIAHASTTHPYITHASTTHHYIVHASTTHPYITYASTTHPHIARASTPTTHPYI 88
Query: 277 KGKSEQNLKLIHPETEHKH 333
S + ++H T H +
Sbjct: 89 THASTTHHYIVHASTTHPY 107
>SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 88 IHDEAPQVEAKYDHQSLIGESGH-HHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLK 264
+H++ V+ DH L + H H++ +H H H K +H H P ++ K ++
Sbjct: 17 VHNKPDHVQNNPDH--LNNKPDHVHNKRDHVHMSDHVPSKPDHVHNKPDHMYKNPANWPD 74
Query: 265 H 267
H
Sbjct: 75 H 75
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 133 SLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEH 249
+LI E H ++ AK H + + H HPVP + H
Sbjct: 323 TLIKELSAHLGSDNRLAKMHLRLLYSHGHPVPYQTQDVH 361
>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
Length = 138
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/76 (25%), Positives = 27/76 (35%)
Frame = +1
Query: 10 NSNLATKMKYHIFLGLIAAVTAFPGIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKS 189
NSN+ + H + L F G H + +Y H + H H H H
Sbjct: 14 NSNIGNNVTRHSDMHL-----RFYGCYH-KLKNPRHRYHHHHHHQHNHHQHHHHHNHHHH 67
Query: 190 HQSIKFEHFHPVPVYV 237
HQ H H + + V
Sbjct: 68 HQQHHHHHHHIINIIV 83
>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
Length = 1815
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 160 HQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQ 294
H I+ + S + H + VYVK HL+ + LE K E+
Sbjct: 296 HFIQERNRHHTLSFATKRAHDLVVYVKLYTEHLMSNQLESAKKEE 340
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 327 QARRWTCPRGGARYPIR-PIVSR 392
QA R+ PRGGARY + P++SR
Sbjct: 208 QAYRYRRPRGGARYQLLFPLISR 230
>SB_43576| Best HMM Match : EGF_CA (HMM E-Value=2.7e-38)
Length = 641
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +1
Query: 91 HDEAPQVEAKYDHQSLIGESGHHHQI-EHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKH 267
H + Q + HQ + HHQ +++H + HQ + +H H + K+++ H +H
Sbjct: 571 HHQKQQNQHHRHHQKQQNQHHRHHQKKQNQHYRHHQKQQNQHHHR---HRKQQNQHHHRH 627
>SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4)
Length = 606
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 234 REEGAQPPSQASS*KGKIRAKPQAD 308
R+EG QPPS S+ KG+ RA+ D
Sbjct: 318 RQEGNQPPSGLSNTKGEGRAEHSGD 342
>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 156 PSSN*ART-RQISPVDQVRTLPPRSCVREEGAQPPSQASS*KGKIRAKPQAD 308
PSS T +Q +PV + T+PP + E P+Q + K KP+ +
Sbjct: 20 PSSGKGATPQQAAPVAALPTIPPPTTAPEPAKNQPAQDKKKEKKSEKKPKTE 71
>SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 3.1
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Frame = +1
Query: 94 DEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKE----HSHLL 261
D+A E Y + H+ +IE +++ + ++ P P+YV KE H LL
Sbjct: 164 DKALVNELDYSGVEFPVTTKHYSRIEKQNSININVFSYDDKQPYPIYVSKERFEDHMELL 223
Query: 262 KHPL---EKGKSEQNL------KLIHPETEHKH 333
L G ++ L K I +T+HKH
Sbjct: 224 LMVLLLITDGSNQHYLLIKDFNKFIFKQTKHKH 256
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFH 219
HHH+ H H Q +F H H
Sbjct: 1033 HHHRRRHHHYHHQQQHQFHHHH 1054
>SB_32555| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 895
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 210 TLPPRSCVREEGAQPPSQASS*KGKIRAKPQADSS*D*TQARRWTCPRGGARYPI 374
++P + C+ +G Q + S + + D++ D QA R+ PRGGARY +
Sbjct: 722 SIPQQPCITIDGTQLKNVDSF--VYLGSTISNDNTLDKDQAYRYRRPRGGARYQL 774
>SB_19167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +1
Query: 79 PGIIHDEAP-QVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHS- 252
P H+E P + +HQ E HH+ KSH S + P+ K +HS
Sbjct: 160 PAESHEERPWKNHDSPEHQPPPAEENTHHEYNQRPWKSHDS---QELQPLAAGSKHQHSK 216
Query: 253 HLLKHP 270
H +P
Sbjct: 217 HKTTYP 222
>SB_44998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 91 HDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHF-HPVPVYVKKEHSHLLKH 267
HD + YDHQ+L + + HQ + A HQ++ + H V ++ H++
Sbjct: 52 HDHQALDDRAYDHQAL-DDRAYDHQALDDRAYDHQALDDRTYNHQALVMIE----HIITR 106
Query: 268 PL 273
PL
Sbjct: 107 PL 108
>SB_20395| Best HMM Match : Extensin_2 (HMM E-Value=0.019)
Length = 348
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +3
Query: 180 RQISPVDQVRTLPPRSCVREEGAQPPSQASS*KGKIRAKPQADSS*D*TQARRWTCPR 353
R I+PVD RT+ P V A PP ++ RA+P + S Q RWT P+
Sbjct: 75 RTITPVDSARTISP---VDSAKAGPPVDSA------RARPPSQS-----QIPRWTAPK 118
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFHPV 225
HHH H H HQ H H +
Sbjct: 275 HHHHHHHNHHHHHQQHHHHHHHHI 298
>SB_40011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/45 (24%), Positives = 18/45 (40%)
Frame = +1
Query: 121 YDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSH 255
+DH L HHH +H H H + H + + ++H
Sbjct: 105 HDHHQL---HDHHHLHDHHHLHGHHHLHDHHTTDIKITTTSTNNH 146
>SB_50619| Best HMM Match : RnaseH (HMM E-Value=0.89)
Length = 724
Score = 23.8 bits (49), Expect(2) = 6.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 210 TLPPRSCVREEGAQPPSQASS*KGKIRAKPQ 302
T PP V A+PPS ASS ++++P+
Sbjct: 367 TAPP--VVENHAARPPSLASSDVSDVQSEPE 395
Score = 21.4 bits (43), Expect(2) = 6.1
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 327 QARRWTCPRGGAR 365
QA R+ PRGGAR
Sbjct: 433 QAYRYRRPRGGAR 445
>SB_57725| Best HMM Match : Peptidase_C54 (HMM E-Value=3.8e-05)
Length = 223
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 97 EAPQVEAKYDHQSLIGESGHHH-QIEH-EHAKSHQSIKFEH 213
E+ Q +A Y H+ + SG+H EH E + H+ F H
Sbjct: 154 ESEQNKALYSHEHRVRSSGYHELTSEHGERSSGHREQPFGH 194
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSIKFEHFHP 222
HHH H H H + + H +P
Sbjct: 200 HHHHHRHRHHHHHPNHPYSHHYP 222
>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
Length = 158
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 154 HHHQIEHEHAKSHQSI 201
HHH H+H H+++
Sbjct: 115 HHHHHHHQHRGCHKAV 130
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = +1
Query: 136 LIGESGHHHQIEHEH 180
+I S HHH H H
Sbjct: 107 IITSSHHHHHHHHHH 121
>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1814
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 155 CPDS-PIKDWWSYFASTWGASSCIIPGKAVTAAMSPRKIWYFI 30
C D+ +++W ST +SC+I + ++ +++W+ I
Sbjct: 1615 CEDALGLQEWGDPLESTCRHASCVIACRVYSSFAEKKRVWWII 1657
>SB_4030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/47 (25%), Positives = 20/47 (42%)
Frame = +1
Query: 82 GIIHDEAPQVEAKYDHQSLIGESGHHHQIEHEHAKSHQSIKFEHFHP 222
GI H + + +DH + I HH + + H S + + F P
Sbjct: 379 GIRHHQTQHLARNHDHLARILHFEHHQHLPNAHGYSDDTQIYLSFKP 425
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,096,417
Number of Sequences: 59808
Number of extensions: 280945
Number of successful extensions: 1173
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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