Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0075
         (392 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.10 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   0.13 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.41 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   0.95 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.7  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.10
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = +1

Query: 154 HHHQIEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKH 333
           HHH + H H+  H +    H H    +    H H    PL        +++ H    H H
Sbjct: 415 HHHTMGHGHSHIHATPHHHHSHAATPH----HQH--STPLAHSSYPAAIQIGHTPHHHPH 468


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 0.13
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 166 IEHEHAKSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE 291
           ++ E  + ++ +K +      +Y+K  H+H  K  LE+ K++
Sbjct: 45  VQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTK 86


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.41
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 152 PDSPIKDWWSYFASTWGA 99
           P SP+ DW+S  AS+W A
Sbjct: 426 PISPLNDWYS-LASSWPA 442


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 116 ASTWGASSCIIPGKAVTAAMS 54
           A+ +GA+S ++PG   TAA S
Sbjct: 109 AAAFGATSSMVPGFGSTAASS 129


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 199 IKFEHFHPVPVYVKKE 246
           I ++H+H  PV+ K++
Sbjct: 6   IHYQHYHITPVFTKQK 21


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 128 WSYFASTWGASSCII 84
           WS+F   +G + CII
Sbjct: 115 WSHFPYVFGEAFCII 129


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 88  LFQEKQSLRQ*VPGRYGTSSWSLDYCCT 5
           LF    SLR  +P R   + W+  YC T
Sbjct: 123 LFYLLVSLRIDLPWRTCGNPWNTRYCLT 150


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 88  LFQEKQSLRQ*VPGRYGTSSWSLDYCCT 5
           LF    SLR  +P R   + W+  YC T
Sbjct: 176 LFYLLVSLRIDLPWRTCGNPWNTRYCLT 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,516
Number of Sequences: 438
Number of extensions: 2437
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)