Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0072
         (470 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IEH2 Cluster: Putative uncharacterized protein PF13_0...    37   0.26 
UniRef50_A7TDP0 Cluster: Putative uncharacterized protein; n=1; ...    35   0.78 
UniRef50_UPI00003C062E Cluster: PREDICTED: similar to regulator ...    33   3.2  
UniRef50_A2DS99 Cluster: Putative uncharacterized protein; n=1; ...    33   3.2  
UniRef50_Q61RX1 Cluster: Putative uncharacterized protein CBG064...    32   5.5  
UniRef50_Q6BWJ3 Cluster: Similar to sp|P09012 Homo sapiens U1 sm...    32   7.3  
UniRef50_Q8IK96 Cluster: Putative uncharacterized protein; n=1; ...    31   9.7  

>UniRef50_Q8IEH2 Cluster: Putative uncharacterized protein
           PF13_0080; n=4; Plasmodium|Rep: Putative uncharacterized
           protein PF13_0080 - Plasmodium falciparum (isolate 3D7)
          Length = 2518

 Score = 36.7 bits (81), Expect = 0.26
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +1

Query: 238 NSNKQLHSIKIHKYIYNIYFSQLIKIVVVTKISK 339
           N NKQL   KI KY+YN YF + I  V+ TK  K
Sbjct: 798 NINKQLRKTKILKYVYN-YFKEFINNVINTKFGK 830


>UniRef50_A7TDP0 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 220

 Score = 35.1 bits (77), Expect = 0.78
 Identities = 21/57 (36%), Positives = 31/57 (54%)
 Frame = +3

Query: 54  TH*TTNNDCTLIIIIQ*NKNLRNKNKIFNYIR*QHRISSTFRIINFVQLVYIITYFI 224
           T+  TN  C + +  +  K L NKNK  N +  Q+ IS    I+NF+ L  +I Y+I
Sbjct: 70  TYNVTNYYCRICVFRKLTKKLDNKNKNKNLLLIQYYIS----ILNFINLYNVILYYI 122


>UniRef50_UPI00003C062E Cluster: PREDICTED: similar to regulator of
           chromosome condensation (RCC1) and BTB (POZ) domain
           containing protein 1; n=1; Apis mellifera|Rep:
           PREDICTED: similar to regulator of chromosome
           condensation (RCC1) and BTB (POZ) domain containing
           protein 1 - Apis mellifera
          Length = 535

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 214 RTLYLK*INSNKQLHSIKIHKYIYNIY 294
           RT++ K +N+N Q   IK HK+ YN+Y
Sbjct: 399 RTIFSKTLNTNNQKKFIKHHKFSYNVY 425


>UniRef50_A2DS99 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 238

 Score = 33.1 bits (72), Expect = 3.2
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +1

Query: 217 TLYLK*INSNKQLHSIKIHKYIYNIYFSQLIKIVVVTKISKRMKI*WTKAEVVAASGSLK 396
           TLY+K IN N  ++ + +H + Y   + Q+I I     I KR +  W   + + ++ + K
Sbjct: 9   TLYIKRINDNVSINQLILHVFAYFSPYGQIIDISASKAIKKRGQA-WVTYQNIESAINAK 67

Query: 397 ALRSGNYYSS 426
              +G Y  S
Sbjct: 68  RDLNGIYIFS 77


>UniRef50_Q61RX1 Cluster: Putative uncharacterized protein CBG06416;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG06416 - Caenorhabditis
           briggsae
          Length = 348

 Score = 32.3 bits (70), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 445 VLVRNFHSSNNFHCGVPLANPTRRRLQLLSTIFSYVWIF 329
           +L+  FH  +  H G   +  T +RLQ+   IF + W F
Sbjct: 232 ILLHTFHLKSRTHTGQMSSLKTMKRLQITVVIFIFTWFF 270


>UniRef50_Q6BWJ3 Cluster: Similar to sp|P09012 Homo sapiens U1 small
           nuclear ribonucleoprotein A; n=1; Debaryomyces
           hansenii|Rep: Similar to sp|P09012 Homo sapiens U1 small
           nuclear ribonucleoprotein A - Debaryomyces hansenii
           (Yeast) (Torulaspora hansenii)
          Length = 116

 Score = 31.9 bits (69), Expect = 7.3
 Identities = 18/68 (26%), Positives = 37/68 (54%)
 Frame = +1

Query: 217 TLYLK*INSNKQLHSIKIHKYIYNIYFSQLIKIVVVTKISKRMKI*WTKAEVVAASGSLK 396
           TLY+  +N   QL ++K + Y+Y   +  +I IV+  +   R +     A V+ A+ ++K
Sbjct: 24  TLYVNNLNDKIQLATLKHNLYVYFSTYGDIIDIVMKAQGKMRGQAHIIFANVMHATNAMK 83

Query: 397 ALRSGNYY 420
           +L+   ++
Sbjct: 84  SLQGKPFF 91


>UniRef50_Q8IK96 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 4638

 Score = 31.5 bits (68), Expect = 9.7
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +2

Query: 137  QLHSITTQNKLNFPYH*LRTASLHHYVLYI*NKSIQINNCIALRS-INIYITFIF 298
            Q+  I  QNK +     ++ + LH Y+L + NKSI   + + + S INIY  FI+
Sbjct: 4198 QMKRIHNQNKKDILIL-IKFSILHMYLLLLKNKSISKKSILYISSDINIYFVFIY 4251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,974,936
Number of Sequences: 1657284
Number of extensions: 6835384
Number of successful extensions: 14886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14881
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)