Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0071
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    30   0.44 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   5.4  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   7.2  

>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 415 TAAIFRHVAGPPAALRF*LPYLFVRYLGRVV 323
           TA +F H  GPP   R+ L YL  +YLG  +
Sbjct: 483 TALLFTHARGPP--FRYSLKYLTKKYLGTTI 511


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 469  IYGRRQTNVTICDSP-STVTAAIFRHVAGPPAALRF-*LPYLFV 344
            IYG++   + + DSP + +T   +  + GP   L F  +P+LF+
Sbjct: 1418 IYGKKADKIAM-DSPRARITTMFYGEILGPLGTLFFTCIPFLFI 1460


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 403 KSQQLQLTGNRKSLRLSDAYHKFKKRIYFIHD 498
           K   + L+G +K +  SDA  KF  +I  +HD
Sbjct: 558 KKINISLSGVQKDIVRSDALLKFSNKIGVVHD 589


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 502 LTRQTSQCLNRLIKDLTLLYKINLKQTKNN 591
           L +Q  +  NRL++++++L + N K  KNN
Sbjct: 522 LEKQPQELENRLLQEISILKQRNQKFLKNN 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,939
Number of Sequences: 5004
Number of extensions: 52710
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)