Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0071
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)                     29   4.4  

>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +1

Query: 466 KFKKRIYFIHD*LTRQTSQCLNRLIKDLTLLYKINLKQTKNNPVRRETHQRKNKIVFLFN 645
           KF KRI  I   L    S  LN  ++DL    +I+   T+   ++  T Q  N+I+ ++N
Sbjct: 124 KFDKRIQTIRSGLELMKSNTLNNSVRDLE--RQISSLTTEAKSLQANTSQEMNRILPIYN 181

Query: 646 S 648
           +
Sbjct: 182 N 182


>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
          Length = 541

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +1

Query: 394 RDGKSQQLQLTGNRKSLRLSDAYHKFKKRIYFIHD*LTRQTSQCLNRL---IKDLT--LL 558
           +  K Q   LT  ++     +AY + K     I +  ++ +    N+L   ++D+   +L
Sbjct: 410 KKNKLQMFTLTRGQQKKLFKNAYKEKKSYAKHILEKYSQNSELKFNKLKPIVRDVAVDIL 469

Query: 559 YKINLKQTKNNPVRRETHQRKNKIV 633
           Y+ +   +K NP +RE  ++  K++
Sbjct: 470 YRGDYSMSKENPAKRERSKKIQKVL 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,713,808
Number of Sequences: 59808
Number of extensions: 350527
Number of successful extensions: 647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)