Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0070
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)                    28   3.1  
SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   5.5  
SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_48977| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   5.5  
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)          27   5.5  
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             27   7.3  
SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   7.3  
SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_19325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
          Length = 978

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 371 CENKPVKLNFHCIKYTK 421
           C+N PV   FHCI++T+
Sbjct: 434 CQNLPVISKFHCIRFTR 450


>SB_52151| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1137

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 149 SEKNLKSSLRSYLIVFIIIG*VETNSPICAIKTF 250
           +EK+LK SLR Y +VF+ +G +E    I  I+T+
Sbjct: 559 AEKSLKESLRLYELVFMNLGSLE-KLKITVIETY 591


>SB_36099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 149 SEKNLKSSLRSYLIVFIIIG*VETNSPICAIKTF 250
           +EK+LK SLR + +VF+ +G +E    I AI+T+
Sbjct: 527 AEKSLKESLRLFELVFMNLGSLE-KLKITAIETY 559


>SB_48977| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 725

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 149 SEKNLKSSLRSYLIVFIIIG*VETNSPICAIKTF 250
           +EK+LK SLR Y +VF+ +G +E    I  I+T+
Sbjct: 348 AEKSLKESLRLYELVFMNLGSLE-KLKITVIETY 380


>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
          Length = 466

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 107 LMLVNCLTLETSASIFFNILFGTHIFDI 24
           L L+N L    SA I+++I FGT I D+
Sbjct: 163 LALINILQSIGSALIYYHITFGTCILDV 190


>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 134 RIMFFLIVSLMLVNCLTLETSASIF 60
           R M FLIV L+LV CL++   A+++
Sbjct: 482 RFMQFLIVILVLVMCLSVAAMATLY 506


>SB_37148| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1073

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 149 SEKNLKSSLRSYLIVFIIIG*VETNSPICAIKTF 250
           +EK LK SLR Y +VF+ +G +E    I  I+T+
Sbjct: 487 AEKKLKESLRLYELVFMNLGSLE-KLKITVIETY 519


>SB_15408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 347 SIVKTITKCENKPVKLNFHCIKYTKLKM 430
           S+VK +T C N+  +L+  C+   +LK+
Sbjct: 615 SLVKDVTTCTNEKRRLSVRCVHRDELKI 642


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/69 (20%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = -3

Query: 407 YNENLILRVY-SRILLLSLLYCMNSKYILTLILDLVKV*LINLRAFYKRMVTKKMFLLRR 231
           +N ++ +R Y + + ++   Y +    ++T +  +++  + N+R   +R VT    ++RR
Sbjct: 697 HNVSVFMRRYDTSVRVVMRRYVVGLCVVVTSVRVVMRRYVTNVRVVMRRYVTNVSVVMRR 756

Query: 230 WVS*FRLIL 204
           +V+  R+++
Sbjct: 757 YVTSVRVVM 765


>SB_19325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 162 KFFSEDILNSNYVFFNCFTNASELFD-IRNVSINIFQYFIRYSYFRH 25
           KF+++ + NS    F  +++  ELFD I N+ I  F +    + FRH
Sbjct: 76  KFYAQRVENSKQYLFLEYSSGGELFDRIDNLKITDFGF---ATVFRH 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,491,126
Number of Sequences: 59808
Number of extensions: 158909
Number of successful extensions: 379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)