Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0070
         (454 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30040.1 68417.m04274 aspartyl protease family contains Pfam ...    27   5.9  
At3g56620.1 68416.m06296 integral membrane family protein / nodu...    27   7.8  

>At4g30040.1 68417.m04274 aspartyl protease family contains Pfam
           domain, PF00026: eukaryotic aspartyl protease
          Length = 427

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 146 IFLIRIMFFLIVSLMLVNCLTLETSASIFFNILFGTHIF 30
           IF    +FFLI+    ++ + L  S ++  N++   HI+
Sbjct: 3   IFFTSPLFFLIILCFSISVVHLSASPTLVLNLVHSYHIY 41


>At3g56620.1 68416.m06296 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]
          Length = 377

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 434 PTFSAWYI*YNENLILRVYSRILLLSLLY 348
           P  SAW I ++ NL+   Y+ I+  S+ Y
Sbjct: 233 PNLSAWNIGFDMNLLASAYAGIMSSSIAY 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,582,140
Number of Sequences: 28952
Number of extensions: 118056
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)