Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0069
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 62 6e-11
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 58 2e-09
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 36 0.007
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 31 0.12
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 31 0.21
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 28 1.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 28 1.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.9
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 7.9
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 62.5 bits (145), Expect = 6e-11
Identities = 63/236 (26%), Positives = 91/236 (38%), Gaps = 11/236 (4%)
Frame = +3
Query: 3 GEHPPSLQEHTATAHGHRIYVFGGEAG---ALTNETPLWIYDTETQIWRKLPGQVNYTSS 173
GE P H + G+ VFGG A + L++ +T + +W+K S
Sbjct: 128 GETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANA-----SG 182
Query: 174 VRRRARDPRGAVSGPRGRRGHTAHALKDCLLIYGGYQDLKGSTNELWAFHYE----SES- 338
R P GR GHT L + ++GG + L N+L F S+S
Sbjct: 183 AR------------PSGRYGHTISCLGSKICLFGG-RLLDYYFNDLVCFDLNNLNTSDSR 229
Query: 339 WHQVRTWN-PGPARHRHAAALHDERLYVHGGQCDLRDCADLWFYDTMSRVWREV-XXXXX 512
W N P PAR H A ++LY+ GG DLW Y W +V
Sbjct: 230 WELASVVNDPPPARAGHVAFTFSDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVA 289
Query: 513 XXXXXXXXXXXXXXXLYIFGGDSHSHPH-NDLWRFHFATETWEHIPNTVKWPSPRT 677
LY+FGG + NDL+ F +++ W + + PSPR+
Sbjct: 290 PNPRAGHAASVVEGILYVFGGRASDGTFLNDLYAFRLSSKHWYKLSDLPFTPSPRS 345
Score = 46.8 bits (106), Expect = 3e-06
Identities = 51/231 (22%), Positives = 79/231 (34%), Gaps = 11/231 (4%)
Frame = +3
Query: 30 HTATAHGHRIYVFGGEAGALTNETPLWIYDTETQIWRKLPGQVNYTSSVRRRARDPRGAV 209
H G IY+FGG A + LW+ + T + L R
Sbjct: 86 HLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSL-----------------RSLG 128
Query: 210 SGPRGRRGHTAHALKDCLLIYGGYQD---LKGSTNELWAFHYESESWHQVRTWNPGPA-R 377
P R GH + + + +++GG + N L+ + S W + P+ R
Sbjct: 129 ETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSGR 188
Query: 378 HRHAAALHDERLYVHGGQC------DLRDCADLWFYDTMSRVWREVXXXXXXXXXXXXXX 539
+ H + ++ + GG+ DL C DL +T W
Sbjct: 189 YGHTISCLGSKICLFGGRLLDYYFNDLV-CFDLNNLNTSDSRWELASVVNDPPPARAGHV 247
Query: 540 XXXXXX-LYIFGGDSHSHPHNDLWRFHFATETWEHIPNTVKWPSPRTDTCA 689
LYIFGG ++ NDLW +H W + P+PR A
Sbjct: 248 AFTFSDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAA 298
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 558 LYIFGG-DSHSHPHNDLWRFHFATETWEHIPNTVKWPSPRTDTCAI 692
+YIFGG S S P NDLW + AT + + + + PSPR +I
Sbjct: 95 IYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASI 140
Score = 32.7 bits (71), Expect = 0.052
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Frame = +3
Query: 225 RRGHTAHALKDC---LLIYGGYQDLKGSTNELWAFHYESESWHQVRTWNPGPA-RHRHAA 392
R H +H + + I+GG N+LW + + + +R+ P+ R HA+
Sbjct: 80 RYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHAS 139
Query: 393 ALHDERLYVHGG--QCDLRDCAD--LWFYDTMSRVWRE 494
L V GG D+ D D L+ +T S VW++
Sbjct: 140 ILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQK 177
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 57.6 bits (133), Expect = 2e-09
Identities = 46/123 (37%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Frame = +3
Query: 12 PPSLQEHTATAHGHRIYVFGG--EAGALTNETPLWIYDTETQIWRKLPGQVNYTSSVRRR 185
PP H+ T +I+V GG + G L++ LW++D ET W + VR
Sbjct: 245 PPPRSNHSVTLVQGKIFVHGGHNDTGPLSD---LWLFDLETLSW----------TEVRSI 291
Query: 186 ARDPRGAVSGPRGRRGHTAHALKDCLLIYGGYQDLKGST-NELWAFHYESESWHQVRTWN 362
R P GPR GH A + D + IYGG +D KG NELWAF+Y + W V N
Sbjct: 292 GRFP-----GPR--EGHQATTIDDTVYIYGG-RDNKGLILNELWAFNYSQQRWSLVS--N 341
Query: 363 PGP 371
P P
Sbjct: 342 PIP 344
Score = 54.4 bits (125), Expect = 1e-08
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Frame = +3
Query: 198 RGAVSGPRGRRGHTAHALKDCLLIYGGYQDLKGST-----NELWAFHYESESWHQVRTWN 362
RG + R GH+ D + ++GG ST N L+A++++S W+ V T +
Sbjct: 104 RGEDNDSPARVGHSIVCSADTIYLFGGCDSETDSTFEVGDNSLYAYNFKSNQWNLVSTQS 163
Query: 363 PGPA-RHRHAAALHDERLYVHGGQCDLRDCADLWFYDT 473
P P+ R H+ L D +L++ GG+C + D+ +DT
Sbjct: 164 PLPSPRTGHSMLLVDSKLWIFGGECQGKYLNDIHLFDT 201
Score = 54.0 bits (124), Expect = 2e-08
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = +3
Query: 369 PARHRHAAALHDERLYVHGGQCDLRDCADLWFYDTMSRVWREV-XXXXXXXXXXXXXXXX 545
P R H+ L +++VHGG D +DLW +D + W EV
Sbjct: 246 PPRSNHSVTLVQGKIFVHGGHNDTGPLSDLWLFDLETLSWTEVRSIGRFPGPREGHQATT 305
Query: 546 XXXXLYIFGG-DSHSHPHNDLWRFHFATETWEHIPNTV 656
+YI+GG D+ N+LW F+++ + W + N +
Sbjct: 306 IDDTVYIYGGRDNKGLILNELWAFNYSQQRWSLVSNPI 343
Score = 35.5 bits (78), Expect = 0.007
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 558 LYIFGGDSHSHPHNDLWRFHFATETWEHIPNTVKWPSPR 674
+++ GG + + P +DLW F T +W + + ++P PR
Sbjct: 260 IFVHGGHNDTGPLSDLWLFDLETLSWTEVRSIGRFPGPR 298
Score = 29.5 bits (63), Expect = 0.48
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 3 GEHPPSLQEHTATAHGHRIYVFGGE--AGALTNETPLWIYDTETQIW 137
G P + H AT +Y++GG G + NE LW ++ Q W
Sbjct: 292 GRFPGPREGHQATTIDDTVYIYGGRDNKGLILNE--LWAFNYSQQRW 336
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Frame = +3
Query: 111 IYDTETQIWRKLPGQV--NYTSSVRRRAR----DPRGAVSGPRGRRGHTAHALKDCLLIY 272
IYD ET+ W +PG + N T+ + D + P R GH L L+I+
Sbjct: 120 IYDIETKQWSHIPGMITENQTNDDAKEVNGSDVDEKSKHLYPSARYGHLHCVLDHYLIIF 179
Query: 273 GGYQDLKGS-TNELWAFHYESESW 341
G QDL S E+ F +S W
Sbjct: 180 CG-QDLSNSYIEEINIFDLDSGKW 202
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 282 QDLKGSTNELWAFHYESE-SWHQVRTWNPGPAR---HRHAAALHDERLYVHGGQCDLRDC 449
Q+L+ E W H ++ H++ T+ G +R H+ D +Y++GG ++
Sbjct: 230 QELQAEIIEKWPKHKLTKLRSHRIATFLKGISRRSGHQMVYNPKDNCIYLYGGWDGVKTF 289
Query: 450 ADLWFYDTMSRVW 488
+D W Y+ +W
Sbjct: 290 SDFWIYNVDKDLW 302
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.21
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Frame = +3
Query: 105 LWIYDTET-QIWR--KLPGQVNYTSSVRRRARDPRGAVSGPRGRRGH--TAHAL----KD 257
++I+D E+ Q+ + ++ GQ N+ S+ R DP G GR GH HAL
Sbjct: 285 MYIWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFAT 344
Query: 258 CLLIYGGYQDL--KGSTNELWAFHYESESWH 344
I G D+ +E+ Y +E WH
Sbjct: 345 SFKIEGVLSDVLFTSDGSEMLVLSYGAEVWH 375
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/38 (31%), Positives = 15/38 (39%)
Frame = +2
Query: 134 LAQASRPSELHFLRASSREGPSWRCQWTSRSEGTHSSC 247
L RP + +AS PSW W+ G H C
Sbjct: 313 LTGKKRPGDFALWKASKPGEPSWDSPWSKGRPGWHIEC 350
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 636 PMFLLQNETATGRCAGVNVSLPRRCRGV 553
P FLL+N T G+ + V+ PRR +
Sbjct: 665 PAFLLENSTKNGKAVKIYVTEPRRISAI 692
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 278 PSINEETVLKGMSCVSPPTSRSTDSATRVPRATTHG 171
P ++V+ + V+ SRS+D+ + P+AT G
Sbjct: 822 PLSRSQSVITSSTDVTSSASRSSDTVSNYPKATIKG 857
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 309 LWAFHYESESWHQVRTWNPGPARHRHAAALH 401
LW+ ESES WN +H + AAL+
Sbjct: 145 LWSLIKESESVLYAVDWNHSKDKHLNGAALY 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,419
Number of Sequences: 5004
Number of extensions: 47814
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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