Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0068
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0028 + 19027510-19027983,19028087-19028278,19028369-190285... 31 0.88
07_03_0971 + 23038409-23039134,23040321-23040611 30 2.0
12_01_1097 + 11531899-11532277,11532482-11533287,11534015-115342... 29 2.7
09_04_0109 - 14674980-14675004,14675861-14676468 29 2.7
06_01_0586 - 4203024-4203425,4203527-4203595,4203681-4203746,420... 29 3.5
12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691 29 4.7
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 4.7
04_04_1383 - 33144047-33144603,33145554-33147129 29 4.7
10_07_0003 - 11720435-11720950,11721621-11721827 28 6.2
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 28 6.2
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 28 6.2
07_01_0544 + 4012457-4012796,4012897-4013069 28 6.2
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 28 6.2
11_06_0610 - 25449085-25453284 28 8.2
11_01_0156 - 1290361-1290876,1291095-1291201,1292027-1292105,129... 28 8.2
08_02_1084 - 24232968-24234779 28 8.2
08_02_0588 + 19036509-19039235 28 8.2
>02_04_0028 +
19027510-19027983,19028087-19028278,19028369-19028545,
19029568-19029663,19030487-19030618,19030950-19031008,
19031234-19031321,19031433-19031693
Length = 492
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 531 AGAACRSTARASRPDREPHSAVPRRPPRDTHVPTR 635
A AA + ASRP R P +P RPPR P R
Sbjct: 81 AAAAQGGGSAASRPPRPPRPPLPPRPPRPPLPPLR 115
>07_03_0971 + 23038409-23039134,23040321-23040611
Length = 338
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 640 SPRVGTWVSRGGLRGTA-LWGSRSGRLARAVLLHAAPAIS 524
+P+ + V+ GG T +W +SGR RA+ H+ P S
Sbjct: 141 NPQTNSTVASGGFDCTVRIWDVKSGRCVRAIDAHSEPVTS 180
>12_01_1097 +
11531899-11532277,11532482-11533287,11534015-11534284,
11534939-11535454
Length = 656
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 486 AVSWGQLILVVEQLIAGAACRSTARASRPDREPHSA 593
AV W + ++ +E+ AG A + T +R +RE S+
Sbjct: 477 AVEWQRFVVTIEESRAGGAYKETRNMARNERESSSS 512
>09_04_0109 - 14674980-14675004,14675861-14676468
Length = 210
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 540 PHPLLAALRQGLTDPTIPLTLCA 472
P PL++ RQ T PT+PLT+ A
Sbjct: 139 PSPLISGRRQASTSPTLPLTVPA 161
>06_01_0586 -
4203024-4203425,4203527-4203595,4203681-4203746,
4204006-4204071,4204642-4204719,4204811-4205233
Length = 367
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 535 VRHAGAPPAPVVQIESPTAP 594
+RHAGAPP ++ PT+P
Sbjct: 326 IRHAGAPPQTMLDAAGPTSP 345
>12_01_0153 - 1172080-1172450,1172493-1172592,1173777-1174691
Length = 461
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 644 NVPPSGNVGVAWW-PPGHGAVGLSIWTTGAGGAPACR 537
++PP + G+ W PP GA ++W GA A R
Sbjct: 101 DLPPEFHFGILGWSPPTDGAADAAMWPDVGSGAAAPR 137
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 583 PTAPCPGGHHATPTFPLGG 639
PT PCP HH T T + G
Sbjct: 1054 PTTPCPPQHHRTQTIAVAG 1072
>04_04_1383 - 33144047-33144603,33145554-33147129
Length = 710
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 553 PPAPVVQ-IESPTAPCPGGHHATPTFP 630
P P VQ + P A GG H+ PTFP
Sbjct: 32 PAVPPVQAVRPPPAAVGGGSHSQPTFP 58
>10_07_0003 - 11720435-11720950,11721621-11721827
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 486 AVSWGQLILVVEQLIAGAACRSTARASRPDREPHSA 593
AV W + +E+ +AG R T +R +RE S+
Sbjct: 61 AVGWQPFAVTIEETLAGGIYRETRSMTRNERESSSS 96
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 504 LILVVEQLIAGAACRSTARASRPDREPHSAVPRRPP 611
+IL L AG++ S+A A P P PR PP
Sbjct: 456 IILSAAVLAAGSSTPSSAAAPAPPSPPEPPSPRHPP 491
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 504 LILVVEQLIAGAACRSTARASRPDREPHSAVPRRPP 611
+IL L AG++ S+A A P P PR PP
Sbjct: 502 IILSAAVLAAGSSTPSSAAAPAPPSPPEPPSPRHPP 537
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 544 AGAPPAPVVQIESPTAPCPGGHHATPTFPLGGTFSTLK 657
A APPA ++PT P G ATP P+G + L+
Sbjct: 116 AAAPPAG----QTPTTPAGTGSKATPATPVGSGVAPLR 149
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 535 VRHAGAPPAPVVQIESPTAPCPGGHHATPTFPLGGTFSTLKY 660
VR AG PP P V P P P + P P G +++ Y
Sbjct: 380 VRVAGKPPQPAVPPGPPAVPAPPTY--PPADPAAGGYTSQPY 419
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 550 APPAPVVQIESPTAPCPGGHHATP 621
+PP P + SP P P GH +P
Sbjct: 716 SPPTPESEASSPPPPAPEGHTPSP 739
>11_01_0156 -
1290361-1290876,1291095-1291201,1292027-1292105,
1292609-1293523
Length = 538
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -3
Query: 644 NVPPSGNVGVAWW-PPGHGAVGLSIWTTGAGGAPACR 537
++PP + G+ W PP GA ++W GA A R
Sbjct: 101 DLPPEFHFGLLGWSPPTDGAADAAMWPDVGSGAAAPR 137
>08_02_1084 - 24232968-24234779
Length = 603
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 641 VPPSGNVGVAWWPPGHGAVGLSIWTTGAGGAP 546
+PP G +G A+ P G+GA+G G GG P
Sbjct: 366 LPPGGMMGQAFDPTGYGAMGR--MGAGFGGFP 395
>08_02_0588 + 19036509-19039235
Length = 908
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 492 SWGQLILVVEQLIAGAACRSTARASRPDREPHSAVPRRPPRDTHVPTRG 638
S G+ L V +++ AA +R ++ + P + PR PPR RG
Sbjct: 194 SVGEPTLDVSEMLLQAAQAWRSRRTQREARPDALPPRHPPRPVAADGRG 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,349
Number of Sequences: 37544
Number of extensions: 378482
Number of successful extensions: 1387
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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