Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0068
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    29   4.2  
Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/42 (30%), Positives = 27/42 (64%)
 Frame = +2

Query: 206 VKIKEFFYFNSYLT*NVHFISHSL*ISYFTNSLETVNYLKIT 331
           +KI   +YF ++L+ +V F+ +     YF ++LE++  +K+T
Sbjct: 209 IKITVMYYFGAFLSYSVMFMGN----IYFKSTLESIQIVKLT 246


>Z81041-1|CAB02786.2|  362|Caenorhabditis elegans Hypothetical
           protein C27A7.2 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -1

Query: 241 IRIEIKKFLDFYSTAFRLNYSLSKSTRIIDGSNMNKLRVIRNSKCVFNNLTF 86
           ++ E     +FY     L  SL K+ ++I    ++  +  +  KC  NN+ F
Sbjct: 252 VKAETLSDFNFYELVSSLKSSLVKAGKVIVKPELHNSKTQQRGKCRINNVKF 303


>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 YSKNNSVEMQSSKNQGIFLFQFLSYVKCTFYITFFIDLI 288
           YSK N  +++  KN+ +FL   LS +    Y+ FF D +
Sbjct: 55  YSKTNWEQLEPGKNKHVFLTLSLSLI--FSYLFFFFDYL 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,823
Number of Sequences: 27780
Number of extensions: 330945
Number of successful extensions: 920
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)