Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0066
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E4916E Cluster: PREDICTED: similar to reverse tr...    42   0.010
UniRef50_UPI0000E49ABF Cluster: PREDICTED: similar to ORF2-encod...    38   0.17 
UniRef50_A7SKR0 Cluster: Predicted protein; n=1; Nematostella ve...    37   0.52 
UniRef50_A7SVD3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ...    35   1.6  
UniRef50_UPI0000E49A58 Cluster: PREDICTED: similar to reverse tr...    35   2.1  
UniRef50_UPI0000E46EE2 Cluster: PREDICTED: similar to ORF2-encod...    35   2.1  
UniRef50_UPI000069DFFE Cluster: UPI000069DFFE related cluster; n...    35   2.1  
UniRef50_Q4QQE0 Cluster: Endonuclease-reverse transcriptase; n=1...    33   6.4  
UniRef50_A7SRG4 Cluster: Predicted protein; n=4; Nematostella ve...    33   6.4  
UniRef50_UPI0000E47849 Cluster: PREDICTED: similar to ORF2-encod...    33   8.4  
UniRef50_A7SZP4 Cluster: Predicted protein; n=1; Nematostella ve...    33   8.4  

>UniRef50_UPI0000E4916E Cluster: PREDICTED: similar to reverse
            transcriptase-like protein; n=5; Strongylocentrotus
            purpuratus|Rep: PREDICTED: similar to reverse
            transcriptase-like protein - Strongylocentrotus
            purpuratus
          Length = 1043

 Score = 42.3 bits (95), Expect = 0.010
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -2

Query: 359  FFDNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVK 255
            F D SF + A R WN LP AVRS+P+L  F+R +K
Sbjct: 1003 FGDRSFSVSAPRLWNNLPQAVRSSPSLAIFQRSLK 1037


>UniRef50_UPI0000E49ABF Cluster: PREDICTED: similar to ORF2-encoded
            protein; n=5; Strongylocentrotus purpuratus|Rep:
            PREDICTED: similar to ORF2-encoded protein -
            Strongylocentrotus purpuratus
          Length = 1124

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = -2

Query: 353  DNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
            D +F + A + WN LP +VR +PTL+ FKR +K +
Sbjct: 1086 DRAFSVCAPKLWNNLPVSVRESPTLDTFKRRLKTY 1120


>UniRef50_A7SKR0 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 52

 Score = 36.7 bits (81), Expect = 0.52
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 362 SFFDNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           ++  ++F + A R WN LP  + S+  +NCFK  +K H
Sbjct: 7   NYGQHAFSVAAPRLWNKLPFVICSSSNVNCFKTQLKTH 44


>UniRef50_A7SVD3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 54

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 362 SFFDNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           ++ D +F I A + WN LP  +R+   LN FK+ +K H
Sbjct: 8   TYGDRAFSIAAPKLWNELPFHLRTIQNLNTFKQCLKTH 45


>UniRef50_UPI0000E49A58 Cluster: PREDICTED: similar to reverse
           transcriptase-like protein; n=2; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like protein - Strongylocentrotus
           purpuratus
          Length = 713

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 377 KCLSSSFFDN-SFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           +CLS       SF   A + WN LP AV++A +++ FK+++K H
Sbjct: 667 QCLSKKRAGELSFPSVAAKLWNQLPTAVQTASSVDQFKKLLKSH 710


>UniRef50_UPI0000E46EE2 Cluster: PREDICTED: similar to ORF2-encoded
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to ORF2-encoded protein -
           Strongylocentrotus purpuratus
          Length = 894

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 353 DNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           D +F + A   WN LP  ++ +PT++ FK+ +K H
Sbjct: 853 DRAFSVCAPTLWNILPAHIQDSPTIDIFKKNLKTH 887


>UniRef50_UPI000069DFFE Cluster: UPI000069DFFE related cluster;
           n=26; Xenopus tropicalis|Rep: UPI000069DFFE UniRef100
           entry - Xenopus tropicalis
          Length = 889

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 320 WNALPDAVRSAPTLNCFKRMVKEH 249
           WN+LP  +R +P L+ FKR +K H
Sbjct: 858 WNSLPQTIRLSPNLSAFKRSLKTH 881


>UniRef50_Q4QQE0 Cluster: Endonuclease-reverse transcriptase; n=1;
            Schistosoma mansoni|Rep: Endonuclease-reverse
            transcriptase - Schistosoma mansoni (Blood fluke)
          Length = 1067

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 353  DNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH*VPIRLV 228
            +N F+I+    WN+LP  VR A  L+ F R++ +    I LV
Sbjct: 1009 ENFFLIKYALIWNSLPSEVRMADKLHTFTRLIDQALTCIDLV 1050


>UniRef50_A7SRG4 Cluster: Predicted protein; n=4; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 66

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 362 SFFDNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           ++ + +F I A + WN LP  +R+   LN FK  +K H
Sbjct: 27  TYGERAFSIAAPKLWNELPFHLRTIQNLNTFKECLKTH 64


>UniRef50_UPI0000E47849 Cluster: PREDICTED: similar to ORF2-encoded
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to ORF2-encoded protein -
           Strongylocentrotus purpuratus
          Length = 570

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 353 DNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           + +F + A + WN LP  +R +PTL  FK  +K +
Sbjct: 532 NRAFSVCAPQLWNNLPHEIRESPTLETFKSKLKTY 566


>UniRef50_A7SZP4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 171

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 365 SSFFDNSFIIQAFRFWNALPDAVRSAPTLNCFKRMVKEH 249
           + F   SF     + WN+LP+A R   +L+ F R ++ H
Sbjct: 130 TEFMKKSFSYDGAKLWNSLPEASRDCTSLSSFVRELEAH 168


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,780,303
Number of Sequences: 1657284
Number of extensions: 12396985
Number of successful extensions: 22820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22814
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)