Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0066
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    26   1.3  
AF457558-1|AAL68788.1|   56|Anopheles gambiae hypothetical prote...    23   6.7  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         23   8.9  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 321 LECSAGCSEKCSNFKLL*KNGE 256
           L C+AG + +CS+ K L K+GE
Sbjct: 131 LGCNAGQTNRCSSLKDLIKHGE 152


>AF457558-1|AAL68788.1|   56|Anopheles gambiae hypothetical protein
           11 protein.
          Length = 56

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 233 LVLFACLFFIHT 198
           LVL  CLFF HT
Sbjct: 12  LVLLICLFFYHT 23


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 199 VWIKNKQANNTRRIG 243
           +W+KN+QAN+   IG
Sbjct: 239 LWLKNRQANHGLYIG 253


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,113
Number of Sequences: 2352
Number of extensions: 14311
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)