Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0065
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal prote... 136 6e-33
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 35 0.025
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr... 29 1.2
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr... 29 1.2
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 29 1.2
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 29 1.2
U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical pr... 29 1.7
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 28 2.2
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 2.2
AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical ... 28 2.2
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr... 28 2.9
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 27 3.8
Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p... 27 6.7
Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ... 27 6.7
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ... 27 6.7
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 26 8.8
>U00067-8|AAK20077.1| 140|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 12 protein.
Length = 140
Score = 136 bits (329), Expect = 6e-33
Identities = 63/107 (58%), Positives = 76/107 (71%)
Frame = +1
Query: 4 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 183
VL+ A GL GLHE KALDKR+A CVLAENCDE Y KLV+ LC EHQIPL+KV
Sbjct: 29 VLRAAHHADGLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVA 88
Query: 184 NNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 324
+ K +GE+ GLCK DK+GKARK+VGCS V+ ++G E +L DY
Sbjct: 89 DKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 34.7 bits (76), Expect = 0.025
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 34 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 201
L G+ + K L + + +C+LA N + +C E +IP V + + ++LG
Sbjct: 69 LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124
>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
protein C30G12.6a protein.
Length = 1100
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 129 LVCGFITVLSQNT*YCLPLVKSFSGFVK 46
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
protein C30G12.6b protein.
Length = 1097
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 129 LVCGFITVLSQNT*YCLPLVKSFSGFVK 46
L+C I ++ Q + CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 40 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 201
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +1
Query: 40 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 201
HG++ + ++ R+A L ++A + + + ALC ++ +P + LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
>U88311-6|AAB42347.1| 382|Caenorhabditis elegans Hypothetical
protein C10H11.8 protein.
Length = 382
Score = 28.7 bits (61), Expect = 1.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 151 NEHQIPLVKVDNNKKLGEWAGLCK 222
N++Q+ + V+NNKK+ +W G K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = -1
Query: 226 QSCRDQPILQAFCCCQP*PV----ESDVRC--TEPEQVSCMRLHHSSQPKHIVLLASC 71
QSC P +Q C CQ P E+ C T P Q SC Q ++V + C
Sbjct: 27 QSCGCAPKVQPSCSCQQTPYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 52 EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 216
E KALD+ Q ++ VL + CD A K ++++ EH + N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557
>AC024805-6|AAK39340.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.9 protein.
Length = 448
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 28 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 135
GGLV G+ A KAL V+ V++E C +A K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250
>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
protein C06E1.10 protein.
Length = 1148
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 214 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 321
L K K+ K +K+ + ++DF EETP + +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +2
Query: 149 ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 313
+T+ + RL G V+AR+T +A G A S ++ R W C
Sbjct: 4 STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58
>Z82062-4|CAB04888.1| 266|Caenorhabditis elegans Hypothetical
protein W02A11.8 protein.
Length = 266
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 211 GLCKIDKDGKARKIVGCSCVVIKDFGEET 297
G C I+ D K VG + ++DFGEET
Sbjct: 80 GKCTIEADITIIKEVGDARAKLRDFGEET 108
>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 109 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 234
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>Z68493-1|CAA92789.1| 150|Caenorhabditis elegans Hypothetical
protein C33A12.1 protein.
Length = 150
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 85 VLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNN-KKLGEWAGLCKIDK 231
+L L + +AAY+K +A+ + ++ LV+ +N+ KKL E G+ +I++
Sbjct: 65 ILRALEQIPRDAAYRKYTEAVVKQ-RLALVQAENDIKKLEEKIGMGQIEE 113
>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 109 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 234
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
protein C24F3.5 protein.
Length = 1479
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +1
Query: 109 CDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKD 234
CDE K++++ + E + +++++NN+ + W K DK+
Sbjct: 790 CDECE-KEVIEGVTFEKKSRVLQLENNQAVLYWKDTAKADKE 830
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 26.2 bits (55), Expect = 8.8
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +2
Query: 44 VFTKPLKLLTRGKQYYVFWLRTVMKPHTRNLFRLCATNIRFHWSRLTTTKSLENGLVSAR 223
V TK LK G Y+F + + +P R + ++ FH KS+ + L R
Sbjct: 84 VSTKSLKFTVTGFIQYLFGTKRIQRPVLRGIAKIFGRYDIFHLISPELVKSITH-LKETR 142
Query: 224 LTRMARQ-GKLSAAPVLSSKISARKLQRWMCSRT 322
T LS P + +++ + L R C RT
Sbjct: 143 TTAWFNLFNFLSFVPHPTDRVT-KPLFRQFCVRT 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,535,993
Number of Sequences: 27780
Number of extensions: 170321
Number of successful extensions: 552
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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