Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0064
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 310 ITIIEKRKQCSQTFKIDFTIFCNSIWRLI 396
           ITI+EK+   S T       F N++W L+
Sbjct: 544 ITILEKKPSRSSTLVSFLQPFSNTLWILV 572


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 NTRNFNNNC*SEYFKTKHYQK 286
           N  N+NNNC   Y+   + ++
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQ 121


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 NTRNFNNNC*SEYFKTKHYQK 286
           N  N+NNNC   Y+   + ++
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQ 121


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 NTRNFNNNC*SEYFKTKHYQK 286
           N  N+NNNC   Y+   + ++
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQ 121


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 224 NTRNFNNNC*SEYFKTKHYQK 286
           N  N+NNNC   Y+   + ++
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQ 121


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 702 CFSCLCQCVKKVDDIFVWIKFESIVCKC 619
           C S +  C+  +        F+SI+CKC
Sbjct: 53  CNSAINPCIYALFSKDFRFAFKSIICKC 80


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 702 CFSCLCQCVKKVDDIFVWIKFESIVCKC 619
           C S +  C+  +        F+SI+CKC
Sbjct: 501 CNSAINPCIYALFSKDFRFAFKSIICKC 528


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,915
Number of Sequences: 438
Number of extensions: 4698
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)