Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0063
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 169 2e-43
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 43 3e-05
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 31 0.11
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.33
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 29 0.76
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 4.1
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 5.4
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.1
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 9.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 9.4
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 25 9.4
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 169 bits (412), Expect = 2e-43
Identities = 87/181 (48%), Positives = 112/181 (61%), Gaps = 5/181 (2%)
Frame = +3
Query: 120 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 299
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 300 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAGEKDFGSWDNI 464
D++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA +GS ++
Sbjct: 75 -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133
Query: 465 KNQLSTASVAVQGSGWGWLGYNKQMKKLLIATCQNQDPLQATTGLVPLFGINVWEHAYYL 644
+ +++ A ++QGSGW WL +K L I T NQD + + P+ GI+ WEHAYY
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189
Query: 645 Q 647
Q
Sbjct: 190 Q 190
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 43.2 bits (97), Expect = 3e-05
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Frame = +3
Query: 360 INHSIFWHNLSPNGGKPSD-----VLTKAG-EKDFGSWDNIKNQLSTASVAVQGSGWGWL 521
+NH F+ L +D + K G + FGS+ +K+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 522 GYNKQMKKLLIATCQNQD---------PLQATTGLVPLFGINVWEHAY 638
Y+ + + N P T +VPL +N+W++AY
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAY 183
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 31.5 bits (68), Expect = 0.11
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +3
Query: 141 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 320
RQKHT P P +A S HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 321 NLAPALKFNG--GGHINH-SIFWHNLSPNGGKPSDV 419
+ +P+ F HI H + H SP GK SD+
Sbjct: 143 SESPSKGFGSFINNHILHKNTSSHPSSPVNGKSSDI 178
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 231 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 404
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 28.7 bits (61), Expect = 0.76
Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 13/156 (8%)
Frame = +3
Query: 150 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 323
HT+P L + N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 324 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAGEKDFGSWDNIKN 470
L A +F + NH F + + + + KA ++FGS +N+ +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 471 QLSTASVAVQGSGWGWLGYNKQMKKLLIATCQNQDP 578
++ + G+ W W+ + + L+ T Q P
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSP 192
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 564 QNQDPLQATTGLVPLFGINVW 626
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +1
Query: 583 RPPLDWSRSSESMYGSTR 636
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 329 CKVDNGVDITFSLCLCEFLFSNV 261
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 647 LKIVRVLPYIDSEERDQSSGGLQRIL 570
+K + +P +D+EER + GLQ I+
Sbjct: 418 IKNIAEMPTVDAEERSRIFAGLQHII 443
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 552 LAISSFVCCSQANPSLSPVLPQKLSTVDSLCYPRIQSL 439
+A SFV S N + P++ Q+ + + C+ R QSL
Sbjct: 498 IAKGSFVIQSHINGRVIPLIKQRFESFATECFIRPQSL 535
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 251 DISRVMFAVMKTHDFTANDRLQCIVLVRK 165
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 585 PAEDPGSGT*LLAISSFVCCSQANPSLSPVLPQKLSTVDSLCYPRIQSL 439
PA P + LA SS V +++ S+ P+ P K + D L PR++ L
Sbjct: 975 PALSPAPSS--LARSS-VSSQRSSTSIIPIKPNKPTKPDHLVAPRVKPL 1020
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 502 PCTATEAVDS*FFMLSQDPKSFSPALVRTSEGLPPFGD 389
P + VDS F+ S D +FSP + SEG FGD
Sbjct: 1485 PYERSPMVDS-GFVGSPDAAAFSPLVQGGSEGREGFGD 1521
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 389 QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFSLCL 285
QV+ K ++D T G K DN + +TF L +
Sbjct: 91 QVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIM 125
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,099
Number of Sequences: 5004
Number of extensions: 55916
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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