Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0063
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 153 2e-37
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 86 2e-17
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 68 6e-12
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046... 30 1.8
06_01_0286 - 2094920-2097805 29 2.4
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 29 4.2
12_01_0485 - 3848721-3849227,3852019-3852369 28 5.6
01_06_0583 + 30400317-30401681 27 9.7
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 153 bits (370), Expect = 2e-37
Identities = 93/207 (44%), Positives = 115/207 (55%), Gaps = 31/207 (14%)
Frame = +3
Query: 120 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQ 293
+ A A+R T LP+LPY+Y ALEP IS EIM LHH KHHATY+ N N A E+L A
Sbjct: 19 LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78
Query: 294 AKGDIDTIINLAPALKFNGGGHINH------------SIFW--------------HNLSP 395
AKGD I++L A+KFNGGG S F+ L
Sbjct: 79 AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138
Query: 396 NGG--KPSDVLTKAGEKDFGSWDNIKNQLSTASVAVQGSGWGWLGYNKQMKKLLIATCQN 569
GG P L A ++DFGS++ + ++S A+QGSGW WL +K+ KKL + T N
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTAN 198
Query: 570 QDPLQAT-TGLVPLFGINVWEHAYYLQ 647
QDPL LVPL GI+VWEHAYYLQ
Sbjct: 199 QDPLVTKGANLVPLLGIDVWEHAYYLQ 225
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 86.2 bits (204), Expect = 2e-17
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 27/187 (14%)
Frame = +3
Query: 165 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 329
L + +ALEP IS+ + LH KH Y+++LN ++LA + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 330 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAGEKDFGSWDNIKNQLSTASVAVQ 500
P ++N + NH FW ++ P GG P + + EKDFGS+ N + + +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189
Query: 501 GSGWGWLGYNKQMKKLLIATCQNQ-------------------DPLQATTGLVPLFGINV 623
GSGW WL ++ +K + QN D + L PL +++
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDL 249
Query: 624 WEHAYYL 644
WEHAYYL
Sbjct: 250 WEHAYYL 256
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 68.1 bits (159), Expect = 6e-12
Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Frame = +3
Query: 165 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 329
LPY +ALEP IS+E + H H ++ LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 330 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAGEKDFGSWDNIKNQLSTASVAVQG 503
P F I NH +W ++ P GG KP + L K +DFGS+D + Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 504 SGWGWLGY 527
SGW WL Y
Sbjct: 249 SGWVWLCY 256
>01_06_0405 +
29103723-29103839,29103928-29104012,29104572-29104674,
29104798-29104882,29105414-29105497,29105627-29105730,
29106522-29106783,29106978-29107414,29107637-29107718,
29109913-29110089,29110640-29110732,29110812-29110877,
29110992-29111038,29111165-29111430,29111443-29111845,
29111992-29112376
Length = 931
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -2
Query: 329 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 195
C VD V + + CEF V + DISR++F K +F ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 153 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 320
+L L +N L +I + SLH H NNL+ + +Q Q GD D I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 476 VDSFCGSTGLRLGLAWLQQTNEEIANSYV 562
VD GS GL+ + L QT EE+A +++
Sbjct: 2 VDKNDGSEGLKFNTSHLMQTTEEVARAFI 30
>12_01_0485 - 3848721-3849227,3852019-3852369
Length = 285
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 518 AWLQQTNEEIANSYVPEPGSSAGHH-WIGPALR 613
AW E I + PG+ AG+H W+GP R
Sbjct: 134 AWKSWLEEHITATGKAPPGNVAGNHTWVGPPQR 166
>01_06_0583 + 30400317-30401681
Length = 454
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = -1
Query: 522 QANPSLSPVLPQKLSTVDSL 463
+ANPSLS V+P +L+T+ SL
Sbjct: 140 RANPSLSGVMPPQLATLRSL 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,325,915
Number of Sequences: 37544
Number of extensions: 419201
Number of successful extensions: 1185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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