Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0063
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10)              95   4e-20
SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)                        29   3.3  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           29   4.3  
SB_55823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_29650| Best HMM Match : Arm (HMM E-Value=7.30076e-43)               28   7.5  
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 28   7.5  

>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 17/185 (9%)
 Frame = +3

Query: 144 QKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDI--DTI 317
           +K+TLPELPY+YN LEP I    + +HH  HHA Y   LN A ++  ++  + D+   +I
Sbjct: 245 EKYTLPELPYDYNELEPHIDEATLRVHHLGHHAAYTKKLNAALKEWRESGKEKDLASKSI 304

Query: 318 INLA-----------PALKFNGGGHINHSIFWHNLSPN-GGKPSDVLTKAG---EKDFGS 452
           + +              +  NGGG +NH+++W  +SPN   +P     K G   +K  G+
Sbjct: 305 VEILRNNEQIPDKWRTDVINNGGGFVNHALYWATMSPNPKSEPRTPTGKIGDLIDKSHGN 364

Query: 453 WDNIKNQLSTASVAVQGSGWGWLGYNKQMKKLLIATCQNQDPLQATTGLVPLFGINVWEH 632
           +   K        ++ GSG+ WL  +     L I    NQ+   A   L P+  I++WEH
Sbjct: 365 FSMFKQWFDEQVNSMFGSGYTWLCQDVTSGFLTILNMGNQESPVAYR-LNPVLVIDLWEH 423

Query: 633 AYYLQ 647
           A+YL+
Sbjct: 424 AFYLK 428


>SB_40642| Best HMM Match : Sod_Fe_N (HMM E-Value=3.8e-10)
          Length = 75

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 40/53 (75%), Positives = 47/53 (88%)
 Frame = +3

Query: 141 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 299
           R KHTLP+LPY+Y+ALEP I+ EIM LHHSKHHATY+NNLN+AEEK  +AQAK
Sbjct: 22  RAKHTLPDLPYDYDALEPTINTEIMRLHHSKHHATYVNNLNIAEEKCLEAQAK 74


>SB_14229| Best HMM Match : VAR1 (HMM E-Value=5)
          Length = 356

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 314 HYQPCTSLEIQWWWSHQPLDLLAQPVT 394
           HY      ++ WW SH PLD  A+  T
Sbjct: 18  HYSNHREAQVGWWLSHWPLDTAARART 44


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  CHKGLDH*FELPVLLARSILCQSFRTSTMHWSRSLAVKS*VFIT 228
           CH+   H +  PV+L+R ++   F TS  H   SL V S V ++
Sbjct: 730 CHQWFCHGWLSPVVLSRVVVTSGFVTSGCHEWLSLVVLSPVVLS 773


>SB_55823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 243 TYINNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVL 422
           T   NLN+A +     Q    I T++ + P L  +GGG  N  I +       GK  DVL
Sbjct: 24  TMHENLNIAFQTQETHQL---IYTVLEVQPRLASSGGGKTNDEIVYELADSILGKLMDVL 80


>SB_29650| Best HMM Match : Arm (HMM E-Value=7.30076e-43)
          Length = 215

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -1

Query: 507 LSPVLPQKLSTVDSLCYPRIQ 445
           L+P +P K +T+++LC+P +Q
Sbjct: 2   LTPPVPSKSTTINTLCHPLLQ 22


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 521 WLQQTNEEIANSYVPEPGSSAGHHWIGPALRNQ 619
           WLQ  + +  NS+V    ++AGH  +  ALR+Q
Sbjct: 673 WLQVIHSQAPNSHVVIVATNAGHPNLTDALRSQ 705


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,847
Number of Sequences: 59808
Number of extensions: 447616
Number of successful extensions: 1224
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)