Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0062
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    43   7e-05
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    42   9e-05
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    31   0.17 
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    28   1.6  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   2.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    27   3.6  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   6.3  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.4  

>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
 Frame = -1

Query: 643 IEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAIL--LGAKRIGHAYALAKHPLLL 470
           ++F P+L +    L        T   G   D + + + L  L  +RI H   L +   L+
Sbjct: 185 VDFPPELFQEVYKLAAEKGIRRTGHAGEEGDPSYIRSGLDNLSLQRIDHGIRLVEDKELM 244

Query: 469 EEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPVVISSDDPGAWEAEPLTDDF 290
           + V + +I L +  +SN  L  V  +   P+  FL  G+P  I+ DDP  +    L + F
Sbjct: 245 KRVAEENIMLTMCPLSNLKLRCVNSIAELPVREFLEAGVPFSINCDDPAYFGGYTLENYF 304

Query: 289 YV 284
            +
Sbjct: 305 AI 306


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
 Frame = -1

Query: 550 ENLMDAILLGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLST 371
           ++L  A LL +  I H   L K P L      + I + ++ +SN  L L  D   +P  T
Sbjct: 610 DHLASAFLL-SHGINHGILLRKVPFLQYLWYLDQIPIAMSPLSNNALFLAYD--KNPFLT 666

Query: 370 FLSKGLPVVISSDDP--GAWEAEPLTDDFYVA 281
           +  +GL V +S+DDP   A+  EPL +++ VA
Sbjct: 667 YFKRGLNVSLSTDDPLQFAFTREPLIEEYAVA 698


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -1

Query: 847 KSIQEGYTKVVK-DYPDFIGAKLIYAPSRRVNRSVLSTYLQIAKDVKKDMPDIFAGFDLV 671
           + I E Y  +V+ D+ D +  K +  PS   N+ +++  LQI +D + DMP+ F+     
Sbjct: 380 EKIVEEYKNIVQNDFYDLM-FKRVGLPSDSSNKILITDLLQILEDYELDMPNCFSFLSRN 438

Query: 670 GQEDLGEPLIEFAPQLLEA 614
               +     E+A +L++A
Sbjct: 439 SPSSMENE--EYAAKLMQA 455


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 645 KGSPRSSCPTRSNPAKMSGMSFLTSLAIWRYVDKTLR 755
           K  P+S CPTR    K+ G  FLT + +  Y+ K L+
Sbjct: 290 KRYPKSECPTRLPLEKLEGDEFLTHVDL--YLRKKLK 324


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 743 VNVSPNSQRRQEGHARHFCWIRSSRTGGSGRAFNRIRTPVT 621
           V+  PN+     G + H   +   RTGG+ R FN   +PV+
Sbjct: 493 VSFHPNAAYLATGSSDHTTRMWDVRTGGTVRVFNAHHSPVS 533


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 490 AKHPLLLEEVIKNDIGLEINIIS 422
           A HP++ + V+KND G  I II+
Sbjct: 650 ASHPVVAKRVVKNDEGEPIEIIA 672


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -1

Query: 748 VLSTYLQIAKDVKKDMPDIFAGF-DLVGQEDLGEPLIEFAPQLLEASESLDYFFHAGETD 572
           + + +  I  D++ +M    A + ++ G+E     ++ F   LL      +Y+F+     
Sbjct: 232 IQTNFNTIKSDIEMEMAGGKARWPEVFGKEVRYRTVLGFLTMLLRELIGNNYYFYYATQV 291

Query: 571 WLGTLTDENLMDAILLGAKRIGHAY 497
           + GT   +  + A++LGA   G  +
Sbjct: 292 FKGTGMTDIFLPAVILGAINFGTTF 316


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 214 IYSSLEDRQKTEALRKFKRNWDSFINNFKCP 122
           +Y  L DR      ++  + W+  +NN  CP
Sbjct: 68  LYCLLSDRYLQPPSKRIFKRWNMELNNLNCP 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,264
Number of Sequences: 5004
Number of extensions: 74061
Number of successful extensions: 198
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)