Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0062
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical p... 50 2e-06
U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical pr... 42 6e-04
U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical pr... 42 6e-04
U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical pr... 42 6e-04
U61947-4|AAO44914.1| 349|Caenorhabditis elegans Hypothetical pr... 36 0.039
U61947-3|AAB03130.2| 391|Caenorhabditis elegans Hypothetical pr... 36 0.039
Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z11505-2|CAA77585.1| 418|Caenorhabditis elegans Hypothetical pr... 28 7.9
>U28928-10|AAN63432.2| 388|Caenorhabditis elegans Hypothetical
protein C44B7.12 protein.
Length = 388
Score = 50.0 bits (114), Expect = 2e-06
Identities = 50/177 (28%), Positives = 71/177 (40%), Gaps = 3/177 (1%)
Frame = -1
Query: 676 LVGQEDLGEPLIEFAPQLLEASESLDYFFHAGETDWLGTLTDE--NLMDAILLGAKRIGH 503
+VG E G+P ++ +LL+ + F G T L + ++ D + L RIGH
Sbjct: 211 IVGVELSGDPHLD-GRRLLKLFVAARRFHGLGITIHLAEVLQNMADVEDYLNLRPDRIGH 269
Query: 502 AYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPVVISSDDPG 323
L P K I LEI + SN + RN + + +G+PV I +DD G
Sbjct: 270 GTFLHTDPYTEYLTNKYKIPLEICLSSNVYSKTTTNYRNSHFNYWRKRGVPVFICTDDKG 329
Query: 322 AWEAEPLTDDFY-VAFVGAASXXXXXXXXXXXXLNSFIYSSLEDRQKTEALRKFKRN 155
LT+++Y A S LNSF Y TE RK N
Sbjct: 330 VIPGATLTEEYYKAAITFDLSTEELIGINQDALLNSFAY-KYNVTDLTETFRKINNN 385
>U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical
protein C34F11.3a protein.
Length = 740
Score = 41.9 bits (94), Expect = 6e-04
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -1
Query: 526 LGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPV 347
L ++ I H L K P+L IG+ ++ +SN SL + +PL +L KGL V
Sbjct: 579 LTSESIAHGILLRKVPVLQYLYYLTQIGIAMSPLSNN--SLFISYQRNPLPEYLQKGLNV 636
Query: 346 VISSDDP--GAWEAEPLTDDFYVAFVGAASXXXXXXXXXXXXLNSFIYSSLEDRQK 185
+S+DDP + E L ++F +A A NS + S ED+ K
Sbjct: 637 SLSTDDPLQFHYTKEALMEEFSIA---AQVWKLSSCDMCELARNSVMQSGFEDKVK 689
>U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical
protein C34F11.3c protein.
Length = 803
Score = 41.9 bits (94), Expect = 6e-04
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -1
Query: 526 LGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPV 347
L ++ I H L K P+L IG+ ++ +SN SL + +PL +L KGL V
Sbjct: 642 LTSESIAHGILLRKVPVLQYLYYLTQIGIAMSPLSNN--SLFISYQRNPLPEYLQKGLNV 699
Query: 346 VISSDDP--GAWEAEPLTDDFYVAFVGAASXXXXXXXXXXXXLNSFIYSSLEDRQK 185
+S+DDP + E L ++F +A A NS + S ED+ K
Sbjct: 700 SLSTDDPLQFHYTKEALMEEFSIA---AQVWKLSSCDMCELARNSVMQSGFEDKVK 752
>U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical
protein C34F11.3b protein.
Length = 764
Score = 41.9 bits (94), Expect = 6e-04
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Frame = -1
Query: 526 LGAKRIGHAYALAKHPLLLEEVIKNDIGLEINIISNAVLSLVRDVRNHPLSTFLSKGLPV 347
L ++ I H L K P+L IG+ ++ +SN SL + +PL +L KGL V
Sbjct: 603 LTSESIAHGILLRKVPVLQYLYYLTQIGIAMSPLSNN--SLFISYQRNPLPEYLQKGLNV 660
Query: 346 VISSDDP--GAWEAEPLTDDFYVAFVGAASXXXXXXXXXXXXLNSFIYSSLEDRQK 185
+S+DDP + E L ++F +A A NS + S ED+ K
Sbjct: 661 SLSTDDPLQFHYTKEALMEEFSIA---AQVWKLSSCDMCELARNSVMQSGFEDKVK 713
>U61947-4|AAO44914.1| 349|Caenorhabditis elegans Hypothetical
protein C06G3.5b protein.
Length = 349
Score = 35.9 bits (79), Expect = 0.039
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Frame = -1
Query: 844 SIQEGYTKVVKDYPDFIGAKLIYAPSRRVNRSVLSTYLQIAKDVKK-DMPDIFAGFDLVG 668
++++G+ + K + I A+ I R +++ L +A D+K+ + I G
Sbjct: 122 AVKKGFDRGEKQFG--IKARSILCCIRGLDKKFPQLILDLATDLKQLGVVAIDVAGSAHG 179
Query: 667 QEDLGEPLIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAIL-LGAKRIGHAYAL 491
++ EP + A Q + HAGE+ + ++ AI + A+RIGH Y +
Sbjct: 180 ADEQYEPEVVAAFQEAH-KRGIHRTVHAGESGG-----PKEVIKAIEDMYAERIGHGYRV 233
Query: 490 AK-HPLLLEEVIKN-DIGLEINIISNAVLSLVR-DVRNHPLSTFLSKGLPVVISSDDPGA 320
+ + LE + + ++ LE S+ + V D +NHP++ + + +S DDP
Sbjct: 234 MRDEEMYLEHFVNSKNVHLEACPYSSVMTGAVPLDWKNHPIARWAKDDVNFSVSRDDPTC 293
Query: 319 WEAEPLTD 296
++ L++
Sbjct: 294 FDNSMLSE 301
>U61947-3|AAB03130.2| 391|Caenorhabditis elegans Hypothetical
protein C06G3.5a protein.
Length = 391
Score = 35.9 bits (79), Expect = 0.039
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Frame = -1
Query: 844 SIQEGYTKVVKDYPDFIGAKLIYAPSRRVNRSVLSTYLQIAKDVKK-DMPDIFAGFDLVG 668
++++G+ + K + I A+ I R +++ L +A D+K+ + I G
Sbjct: 164 AVKKGFDRGEKQFG--IKARSILCCIRGLDKKFPQLILDLATDLKQLGVVAIDVAGSAHG 221
Query: 667 QEDLGEPLIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMDAIL-LGAKRIGHAYAL 491
++ EP + A Q + HAGE+ + ++ AI + A+RIGH Y +
Sbjct: 222 ADEQYEPEVVAAFQEAH-KRGIHRTVHAGESGG-----PKEVIKAIEDMYAERIGHGYRV 275
Query: 490 AK-HPLLLEEVIKN-DIGLEINIISNAVLSLVR-DVRNHPLSTFLSKGLPVVISSDDPGA 320
+ + LE + + ++ LE S+ + V D +NHP++ + + +S DDP
Sbjct: 276 MRDEEMYLEHFVNSKNVHLEACPYSSVMTGAVPLDWKNHPIARWAKDDVNFSVSRDDPTC 335
Query: 319 WEAEPLTD 296
++ L++
Sbjct: 336 FDNSMLSE 343
>Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical
protein T04D3.5 protein.
Length = 300
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 296 RFLCCFCWSGQPTRRLKTTETI 231
R +C FC+ QPT RL T E +
Sbjct: 141 RMVCSFCYRAQPTHRLYTIEDV 162
>Z11505-2|CAA77585.1| 418|Caenorhabditis elegans Hypothetical
protein F59B2.3 protein.
Length = 418
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 646 LIEFAPQLLEASESLDYFFHAGETDWLGTLTDENLMD--AILLGAKRIGHAY 497
++ AP+L A E+++YF G T +G + + A+L GAK I H +
Sbjct: 195 IVTMAPELEGAQEAIEYFVSTGTTVSVGHSSAKLGPGEMAVLSGAKMITHLF 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,545,490
Number of Sequences: 27780
Number of extensions: 402362
Number of successful extensions: 1082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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