Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0061
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 157 6e-39
U41746-7|AAK71873.1| 803|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical p... 28 5.0
Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical pr... 28 5.0
AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine n... 28 5.0
AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho ... 28 5.0
AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-... 28 5.0
Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical pr... 27 8.7
AC024817-19|AAY86304.1| 91|Caenorhabditis elegans Hypothetical... 27 8.7
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 157 bits (381), Expect = 6e-39
Identities = 78/195 (40%), Positives = 118/195 (60%), Gaps = 2/195 (1%)
Frame = +2
Query: 71 MVTIIKNQLLKHLSRFTKNLSPEQISLSALRGSGXXXXXXXXXXXXXXXXXXPGWLRLTS 250
M +IIKNQL+KHLS+FTKNL PEQISL L+G+ P WL++
Sbjct: 1 MTSIIKNQLVKHLSKFTKNLKPEQISLDVLKGNSKLQFIEINEDVLTEILELPSWLKIKR 60
Query: 251 AKCNRASFRIQWTKLKTAPIVLNLDEVHIALEVCSEPRVMNPS-AAGALPVPGKYSYIHK 427
A C + + WTKLKT PI + +DE+++ +E+ +E + S G L Y +++K
Sbjct: 61 AFCTGVAVNVPWTKLKTCPIQIFIDEINVDVELTNEHKKQAKSNPLGNLGDSSSYGFMNK 120
Query: 428 VIDGISVAVNHVQIDFNCDAFTSSVQISRVTVESRTPD-GRKGDLRLTRIKCTDTGQLLI 604
+I+ +S+ ++ V+I+F+ D F S + R++VESR+P + DLR TRI C++T + L+
Sbjct: 121 IIENMSLYISSVEINFDSDVFGGSFMLQRLSVESRSPGWAQVKDLRQTRITCSETNRTLM 180
Query: 605 FKELEWQSARIEAKA 649
FK+L W RIEA A
Sbjct: 181 FKQLSWHLLRIEASA 195
>U41746-7|AAK71873.1| 803|Caenorhabditis elegans Hypothetical
protein T18H9.7a protein.
Length = 803
Score = 30.7 bits (66), Expect = 0.94
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 299 TAPIVLNLDEVHIALEVCSEPRVMNPSAAGALPVPGKYSYIHKVIDGISVAVNHVQIDFN 478
T P + N+ I L+ C P V + LP+ + Y+ + I V NH +ID +
Sbjct: 27 TVPRIFNVSINRILLD-CVFPEVNSIIVTAKLPLSKRNRYLRS--NEIKVTPNHGRIDLD 83
Query: 479 CD 484
CD
Sbjct: 84 CD 85
>Z68159-10|CAD30432.1| 826|Caenorhabditis elegans Hypothetical
protein C33D9.1b protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 364 GYESECGRCFTCSRKI*LYTQGDRRNLSG----CESCTNRLQL 480
G+ S +C CSR++ G RRN S C++CT + L
Sbjct: 651 GFLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMDL 693
>Z68159-9|CAA92282.2| 844|Caenorhabditis elegans Hypothetical
protein C33D9.1a protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 364 GYESECGRCFTCSRKI*LYTQGDRRNLSG----CESCTNRLQL 480
G+ S +C CSR++ G RRN S C++CT + L
Sbjct: 651 GFLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMDL 693
>AF339059-1|AAL50361.1| 826|Caenorhabditis elegans Rho guanine
nucleotide exchangefactor FGD-1 protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 364 GYESECGRCFTCSRKI*LYTQGDRRNLSG----CESCTNRLQL 480
G+ S +C CSR++ G RRN S C++CT + L
Sbjct: 651 GFLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMDL 693
>AF326352-1|AAL50355.1| 844|Caenorhabditis elegans putative Rho
guanine nucleotideexchange factor FGD-1 protein.
Length = 844
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 364 GYESECGRCFTCSRKI*LYTQGDRRNLSG----CESCTNRLQL 480
G+ S +C CSR++ G RRN S C++CT + L
Sbjct: 651 GFLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMDL 693
>AB060647-1|BAB43906.1| 826|Caenorhabditis elegans putative GDP-GTP
exchange factor protein.
Length = 826
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 364 GYESECGRCFTCSRKI*LYTQGDRRNLSG----CESCTNRLQL 480
G+ S +C CSR++ G RRN S C++CT + L
Sbjct: 651 GFLSRGSKCVKCSRRLCKKCFGRRRNESKKHRICDTCTKNMDL 693
>Z81575-9|CAB04635.1| 130|Caenorhabditis elegans Hypothetical
protein R08H2.10 protein.
Length = 130
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 398 VPGKYSYIHKVIDGISVAVNHVQIDFNCDAFTSSVQISRVTVESR 532
V G + + +I I+V V+HV + F+C A TS +I+ V SR
Sbjct: 7 VGGIIFFSNSLIIFIAVTVDHVTLSFDC-ATTSQKKITLKNVTSR 50
>AC024817-19|AAY86304.1| 91|Caenorhabditis elegans Hypothetical
protein Y54G2A.48 protein.
Length = 91
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 434 LSPCVYNYIFLEQVKHRPHSDS*PEVLNIPPKLYGL 327
+SP V N IF +K++P + P KL+GL
Sbjct: 18 MSPAVINGIFAIAMKYKPEEGTKPTTSEAMMKLFGL 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,492,735
Number of Sequences: 27780
Number of extensions: 292382
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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