Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0061
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    26   0.27 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   4.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.8  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 374 PSAAGALPVPGKYSYIHKVIDGISVAVNHV 463
           PS + ALP+ GKY     ++ G+SV +  V
Sbjct: 289 PSTSLALPLLGKYLLFTMILVGLSVVITIV 318


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/16 (43%), Positives = 14/16 (87%)
 Frame = +1

Query: 379 CGRCFTCSRKI*LYTQ 426
           CG+ FTCS+++ ++T+
Sbjct: 209 CGKGFTCSKQLKVHTR 224


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 609  LKISSCPVSVHLILVSLRSPFRPSGV 532
            + I +  +S   ILVS R P +P+GV
Sbjct: 1184 IAIKALVMSSESILVSWRPPSQPNGV 1209


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 425 KVIDGISVAVNHVQIDFNCDAFTSSVQISRVTV 523
           K+IDG  VA+N        D +++ +++  + V
Sbjct: 132 KIIDGHVVAINETTYTDGSDDYSTLIRVRVIDV 164


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 107 LSRFTKNLSPEQISLSALRGSG 172
           LS F  + SPE + +  L+G G
Sbjct: 187 LSDFVIHRSPELVPMPTLKGDG 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,353
Number of Sequences: 438
Number of extensions: 3900
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)