Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= cesb0060
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0521 - 23631951-23633810 31 1.4
09_03_0174 - 13097138-13098265 29 5.5
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960... 29 5.5
09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730 28 7.2
07_03_0430 + 18150006-18151412 28 7.2
07_03_0429 + 18103724-18105196 28 7.2
07_03_0424 - 18060133-18061581 28 7.2
09_06_0081 + 20745627-20748144,20748211-20748308 28 9.6
06_03_1105 - 27634787-27636025 28 9.6
06_03_0395 - 20354713-20355570 28 9.6
05_01_0362 - 2832100-2832123,2832566-2832596,2832805-2833541,283... 28 9.6
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 28 9.6
>02_04_0521 - 23631951-23633810
Length = 619
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +2
Query: 518 ARPTEITNEDLVTFVATVPPAVGCVTASWRHATAASGSRTRWAAPSRPASRGGPVPNSP 694
A P L+ F A++PP ASWR + S R + PA+ G P P P
Sbjct: 25 AAPAATDRAALLAFRASLPPPSRAALASWRGPLSES---WRGVSLHPPAAAGAPAPAPP 80
>09_03_0174 - 13097138-13098265
Length = 375
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/67 (25%), Positives = 26/67 (38%)
Frame = +2
Query: 515 SARPTEITNEDLVTFVATVPPAVGCVTASWRHATAASGSRTRWAAPSRPASRGGPVPNSP 694
S+ PT++ L + + P V WR A + S W P ++ G N
Sbjct: 14 SSLPTDVLVRILGSLRWSSHPNAALVCRQWRSAVSLSSFYPAWITPLLLSTAGVGTANIR 73
Query: 695 YNESYYN 715
Y YY+
Sbjct: 74 YYSPYYD 80
>04_04_1371 +
32995337-32995358,32995745-32995822,32995876-32996019,
32997595-32997930,32998014-32998166,32998286-32998501,
32998600-33000695
Length = 1014
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 459 HPQTVAAHVKDCSNWTTT*IPENFECLFADLHTPRLED 346
HPQT + +N T +P NF +F L T L D
Sbjct: 496 HPQTALQSIVISTNRITGKLPANFSAIFPSLSTLDLSD 533
>09_02_0166 + 5213693-5213979,5214190-5214506,5214594-5214730
Length = 246
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 512 PSARPTEITNEDLVTFVATVPPAVGCVTASWRHA 613
P +PT IT+E+ + + +V ++ V SWR A
Sbjct: 193 PQKKPTTITDEEKILRIKSVEYSLPSVKLSWRDA 226
>07_03_0430 + 18150006-18151412
Length = 468
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 749 PSQDVVKGRPVNCNMTHYRANWVPGPPSRQAVKAQPTAC 633
P +DV++ R V C +TH A W AV+ PT C
Sbjct: 345 PQRDVLRHRAVGCFLTH--AGW--NSTLEAAVEGVPTVC 379
>07_03_0429 + 18103724-18105196
Length = 490
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 749 PSQDVVKGRPVNCNMTHYRANWVPGPPSRQAVKAQPTAC 633
P +DV++ R V C +TH A W AV+ PT C
Sbjct: 362 PQRDVLRHRAVGCFLTH--AGW--NSTLEAAVEGVPTVC 396
>07_03_0424 - 18060133-18061581
Length = 482
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 749 PSQDVVKGRPVNCNMTHYRANWVPGPPSRQAVKAQPTAC 633
P +DV++ R V C +TH A W AV+ PT C
Sbjct: 354 PQRDVLRHRAVGCFLTH--AGW--NSTLEAAVEGVPTVC 388
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Frame = +2
Query: 554 TFVATVPPA---VGCVTASWRHATAASGSRTRWAAPSRPASRGGPVP 685
TFV VPP V T +R G+ + AP+ P GP P
Sbjct: 7 TFVWPVPPCRWTVSSATGRYRFGYGYGGASSSSTAPAAPTITRGPTP 53
>06_03_1105 - 27634787-27636025
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 572 PPAVGCVTASWRHATAASGSRTRWAAPSRPASRGGPVP 685
PP + V +S RH+T++S S +P+R P P
Sbjct: 265 PPRIRLVRSSHRHSTSSSSSSRAGRSPARRRPSPPPPP 302
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 681 TGPPLEAGREGAAHRVREPLAAVA 610
T PPLEA G R R P AVA
Sbjct: 131 TAPPLEAPANGCCRRCRGPSTAVA 154
>05_01_0362 -
2832100-2832123,2832566-2832596,2832805-2833541,
2834333-2834825,2835762-2835770,2838062-2838561
Length = 597
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = +2
Query: 506 RCPSARPTEITNEDLVTFVATVPPAVGCVTASWRHATAASG 628
R PS R E+ + VPPA G A W A AA G
Sbjct: 75 RFPSVRAAEVKGKPHFADFGLVPPAWGAAAAPW-IAAAADG 114
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 283 DEAAVRAGTCTFPVKYLGCVEVFESRGMQVCEE 381
D+ VR G C P + + +++F S+ + V EE
Sbjct: 268 DDPGVRNGECELPTEVIDELKLFHSQNVSVTEE 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,551
Number of Sequences: 37544
Number of extensions: 412363
Number of successful extensions: 1718
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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