Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0058
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.1  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 370 IHYIIGMRSNLIVLNSDCSIFQTGMNDFHPIYIISI*ANLRIYLTGFSLLHVVIPSQRES 549
           ++ +IG  S   +  S  SI QT + D H +Y +   + +  YL GF L+  ++ S    
Sbjct: 324 LYVVIGQLS---LYGSIISIIQTFIFDRHHLYTLHWTSEMGGYLAGFILVMFLLYSLAPI 380

Query: 550 VINTCYAHIYFEKLLT 597
           +     A  Y   LLT
Sbjct: 381 LFRMSSATFYNISLLT 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,917
Number of Sequences: 5004
Number of extensions: 58920
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)