Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0058
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.73 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.0  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 631 NCWITHIKYHR*LTIFQSKYVHSTC*SLTPAVKE 530
           +CW+   K+H  + +     V+ T   LT  VKE
Sbjct: 120 SCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKE 153


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 640 LSTKTSALIITIKYYLISQIKPTNFKLL 723
           L+   S+L  T+KYY +    P NFK +
Sbjct: 297 LTEAYSSLENTLKYYEVGSNVPFNFKFI 324


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 55  WNEVPYGTMRRGTLN 11
           W   P+G MRR  LN
Sbjct: 176 WIWTPHGWMRRNVLN 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,863
Number of Sequences: 438
Number of extensions: 4372
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)